wu:fb55g09 (cl012)


Basic Information

Item Value
gene id wu:fb55g09
gene name cl012
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87341189 ~ 87342665 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610803.2
ATTTGCAACTGTCACTTCAGCTGGAAAAGAGACACACAACAAGAACAACAGGGTCACTAGTCAGCTATCAATTAAAAATAAGCAAGAAATACACCTGAAACTCGAAACTTATTTGTCTATCTTCTATAGtcgtatttttatatatatattttttttaaatttactaTTTGACGAGAGAAAAGGGGTGTGACAGGCTAGATAGCGCAGCTGTAGCCCCGAGCAGGTCAAGCTGCTTGTATCAGAGGCGTGCTACCAGGCTATGTACTCTCTAAAGCCAGTGGTCAAGAAAAAAACGAAGAAGATTGTAAAAAGGTAGACTTTTAGGGGTTTTCGTGTGGTGAGCCACGAAAGTATACGAAACCCCATACAGAGAAATTACAATTTCTTTGTTACCTAGCCGCTGACAGCAGCGGAAAAGAGAATGTAAAGCTCAGTGAAAGCACTTAAGCTGCGTTTCTAATGCTTTTCGAAGAAGAGATGTATGGGAAGGCCATGATGTGCCAGTGGCGGGTCTACAGTGACCGACCTGCCTGCAAAGACCAACAGAAGGATGGGCAGCAGGCAAGGAGAGGGGACAACAGCAAGCTTAGTTGGTCCAAGAACGGGAGGAGGCAGCAAGGGTAtcgggggaagagaggaagggtgcatggacatcatcatcatcatcctcaccacccCAGCCAGTTCTACAAACAGAACCGACCACCTCGTACGATGACGTCACTGCGTCCTGTCAACATCAAAGGTAACAGAGCGCCAGGAATGAGAGCTCCGAGGAACACCAACCAATTCCTGATGCACGAAAAATACCAGATGATGCATATGCGTTCGGACTCCATCGGCACAGACAGTGGGTCTGACTGCGAAACTGATTTCACAGACATGGACTCGTATCTAGGCGTGCTAGAGAACGCAAGGGGCGCTCTCCTCGACAGTCCAGATCTCACAACAACGGCAGCACGGTTCTTCCCTCGACAACTGGCCAAGTGCCAGCAGTTCCCATTCTTCAATTTAGGGGATTTGTACCAAGAGGAGCAGGAGAGTAACAGTATGCAGTATTTCCCGTCAGATAACGACGTGATGCAGAGTGAAGATTTCATGCAGAAAGACTTCAATGACTTTTGTGACACATTCAGTGGGACCGAACCACCGATAGACATGTAAAAGGACCTGATATCTAAAtgtaatgtatttctgtttaCATTAAATGTATGTTTACATTAGATGTAGGAGAGAAAACATACCTCAATTTTAACAGATATTGGTTACTGTTACAATATATGATTGTTTTCTGATACTGTCTGTTTATGGTGTTATTGACAAATGCTGTGTTGGGGGAGTGGTTAAATGGGTAGGAGTGAGACCCACGAACCAATCACATCCGTGCTCGTTGGATTATTCTACACCATTGCTTGATGCCGTCATTGCATTATTGAAAAACGCTTCGAACAATAAATAACTGCTTCTTATTAAAAAA

Function

NR:

description
uncharacterized protein LOC110528670

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610803.2 True 1477 mRNA 0.44 1 87341189 87342665

Neighbor

gene id symbol gene type direction distance location
LOC110528667 cenpp coding downstream 47223 87114104 ~ 87293966 (-)
LOC118965396 NA coding downstream 281325 87058268 ~ 87059864 (-)
atrip atrip coding downstream 287315 87007438 ~ 87053874 (-)
LOC110528663 LOC106583798 coding downstream 374197 86944797 ~ 86966992 (-)
poc1a poc1a coding downstream 520676 86723768 ~ 86820513 (-)
si:dkeyp-87e7.4 LOC106583812 coding upstream 67515 87410180 ~ 87425169 (-)
LOC110528674 pdhb coding upstream 134724 87477389 ~ 87494213 (-)
pxk pxk coding upstream 152721 87495386 ~ 87555025 (-)
rpp14 rpp14 coding upstream 212625 87555290 ~ 87565881 (-)
LOC110528675 rpp14 coding upstream 212631 87555296 ~ 87556594 (-)
G660031 NA non-coding downstream 14466 87326101 ~ 87326723 (-)
G660022 NA non-coding downstream 28174 87312481 ~ 87313015 (-)
G659998 NA non-coding downstream 87211 87253538 ~ 87253978 (-)
G659992 NA non-coding downstream 95465 87244103 ~ 87245724 (-)
G659991 NA non-coding downstream 98618 87241847 ~ 87242571 (-)
G660054 NA non-coding upstream 22873 87365538 ~ 87365986 (-)
G660066 NA non-coding upstream 46925 87389590 ~ 87389883 (-)
G660067 NA non-coding upstream 47735 87390400 ~ 87390909 (-)
G660065 NA non-coding upstream 50278 87392943 ~ 87393257 (-)
G660070 NA non-coding upstream 51311 87393976 ~ 87394226 (-)
G659824 NA other downstream 333897 87003736 ~ 87007292 (-)
G659543 NA other downstream 707333 86632407 ~ 86633856 (-)
G659250 NA other downstream 1180266 86160242 ~ 86160923 (-)
G658255 NA other downstream 2333684 85006726 ~ 85007505 (-)
LOC110528687 LOC106583825 other upstream 910398 88253063 ~ 88345745 (-)
G661128 NA other upstream 1416828 88759493 ~ 88759938 (-)
G661426 LOC106583832 other upstream 1710411 89053076 ~ 89061481 (-)
G661335 NA other upstream 1754382 88831729 ~ 89104274 (-)
G661773 LOC106583842 other upstream 2115486 89458151 ~ 89459700 (-)

Expression


Co-expression Network