LOC110528678 (dnase1l3)


Basic Information

Item Value
gene id LOC110528678
gene name dnase1l3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87647017 ~ 87658838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984304.1
agagagagagactgaaacagagaaacagagagagagagagagagagactgtagccAACATTACAGAAGATATGTGTGACGTCTTTTTTTAATCATACATCCAAAAAGGAAGTGTTGTGTTTCAGAtagcttaaacacacacacacagcagctgctACTTCTCCTGGCTCTCTGTACCCTCAGACAGTCTGTTGTTGACCTCTCAGTGAGCATGTCGGGTAGTGTTAGTGTTTGGAGGGTAGTGAGCTGGATGGTGCTGGGCATGGTTCTGGGGCTCAGTGGTGGGGGCTCAGCCCTGAAGATCTGCACCTTCAACATCCAGTCCTTTGGAGAGAAGAAAATAGAGAAGCCAGAGGTGGTTGATGTCATATTGGCTCTGATCGCTCGCTGTGACATCATGCTGGTGATGGAGATTAAAGATCTCAGTGCGAAGGCTTTCCCTCAGCTCATGACTCAACTCAACAGTGACTACAGCTCCAGGAAGAATGAGTATAACTATGTGATCAGTGACAGACTGGGACGTAAGTCCTACAAGGAGCAGTACGCCTTTATCTACAGACAGAGGCTGGTGTCAGTGAAGGAAGTGTACCAGTACCCTGACACCCAACCTGGAGATGAGGATGCCTTCTCCAGGGAACCTTTCATCGTCTGGTTCTCTTCCCCCAAAACAGCCGTCCAGGACTTTGTGATCATCCCGATCCACACCACTCCAGAGACGTCCGTCAGGGAGATAAATGAACTGTATGATGTGTTCCAAGATGTCAAGCAACGATGGACCTCAAAgAATGTGATCATCATGGGCGACTTCAATGCGGCCTGCGGCTACGTACCCAAGAAGCAGTGGAGCAGCATCCGCCTGCGGTCTGACAGCAGCTTCCTGTGGCTGACGGGTGACACCATCGACACCACCGTCAAGGAGTCCACAGACTGTGCCTATGACAGGGTTGTCCTCCACGGGGACAAGATGATCCAGGCAGTCAACCCAACCTCTCTGGATGTGTTTGACTTCAGACGGGCCTACGGACTAACCGAGCTACAGgCCCTGGCGGTGAGTGACCACTACCCAGTGTGCATCACTGTGAAGGCCGCTCCGAGGAATAAGGGTTAACGTCTTGTCCTCGTAACGGTACCGTCCTGAGGACGTCTCGGTGTCCCTCGGGTGGTCTGTGTGCGTCCTGCAGTGTTTGCTTTGCTCCAGTCCAGAGCTAATTAATCCCAGAAGCATGGTCACTGAGCTGCACTCTGTGCTTCAAGATTATTATACTTTTGTGTTTTATATTCGTTTTTATTTCTAttagtatttttttgttgttgttgacttaaTCTAGTAGTTTTTATTCTATTTGAGTTTTCTAAAAACATTTCTATTTGGTTTTTGATATTATTTAGTTTTAGTGTTAGCCTGGGTGGCTAATAGCTAGGAGGCATGTATGTGTTGTAGGTTGTATTTCTAGTTGTCTCAGACCTAGATTATAGATTATTACAGATTGCATTACAGATTAGACAGACCTAGACCCAGAGAAACAGGCCTATTGAAACATCTCCTGACAGCATTTACCTGACAGATTCAAAAGCTTGAAAAACccattagaaaaaaaatctaaaactaaACATAGTGGGTTTTTCATGTAGTTTAGTTTTGGAATCAAAAATAATAGTTTCAGTACAGTTTTAGTTTTTAAAGTGGGTTtcttaattatatatatatatttttttaataaatatttttttcatgatTAGTTTTAGTTTCCTATAATAACGTTGGCGTACTTTGCTCCAGCCACTCAgaggttaatgtgtgtgtttccttgTTGCTAGGCGACCAGCTGTGCCTGTGACCAGCTCATTTGAAGCATCTTGCTTTTCTTCTCCCCATGCTTTGTTTACTGCATCACATGGCAGCTTTTTCCTGCCATCCTATtaccaagtagtgcactatatagggaatagggccctggtctatagtagtg

Function

symbol description
dnase1l3 Predicted to enable DNA binding activity and deoxyribonuclease I activity. Involved in apoptotic DNA fragmentation. Located in endoplasmic reticulum and nucleus.

NR:

description
deoxyribonuclease gamma

GO: NA

KEGG:

id description
K11995 DNASE1L; deoxyribonuclease-1-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984304.1 True 1969 mRNA 0.45 8 87647017 87658838
Loading

Neighbor

gene id symbol gene type direction distance location
nisch LOC106583810 coding upstream 261694 87346077 ~ 87387283 (+)
nol8 nol8 coding upstream 331901 87293964 ~ 87315116 (+)
ogna LOC106583805 coding upstream 397843 87232952 ~ 87249174 (+)
aspn aspn coding upstream 449008 87169591 ~ 87198009 (+)
ecm2 ecm2 coding upstream 490112 87116760 ~ 87156905 (+)
LOC110528683 slmap coding downstream 292591 87951429 ~ 87953496 (+)
dennd6aa dennd6a coding downstream 307731 87966569 ~ 88011485 (+)
il10 il10 coding downstream 395273 88054111 ~ 88058818 (+)
LOC110528686 NA coding downstream 462031 88120869 ~ 88127498 (+)
LOC110528688 LOC106583827 coding downstream 580089 88238927 ~ 88241064 (+)
G660175 NA non-coding upstream 8795 87635824 ~ 87638222 (+)
G660171 NA non-coding upstream 9324 87629218 ~ 87637693 (+)
G660137 NA non-coding upstream 14638 87574253 ~ 87632379 (+)
G660169 NA non-coding upstream 15767 87625437 ~ 87631250 (+)
G660133 NA non-coding upstream 77488 87567812 ~ 87569529 (+)
G660193 NA non-coding downstream 14628 87673466 ~ 87673723 (+)
G660196 NA non-coding downstream 25732 87684570 ~ 87686074 (+)
G660202 NA non-coding downstream 27617 87686455 ~ 87687178 (+)
G660205 NA non-coding downstream 34392 87693230 ~ 87693969 (+)
G660199 flnb non-coding downstream 53499 87712337 ~ 87732792 (+)
G659706 NA other upstream 544747 87100464 ~ 87102270 (+)
G659136 NA other upstream 1125195 86521060 ~ 86521822 (+)
G659058 NA other upstream 1234432 86408702 ~ 86412974 (+)
G658887 NA other upstream 1750868 85895826 ~ 85896149 (+)
G660790 NA other downstream 763926 88422764 ~ 88427927 (+)
G660853 NA other downstream 963475 88622313 ~ 88689342 (+)
G660886 NA other downstream 1033056 88691894 ~ 88694076 (+)
G661162 NA other downstream 1158247 88817085 ~ 88817655 (+)
G661172 NA other downstream 1314146 88972984 ~ 88975830 (+)

Expression

LOC110528678(dnase1l3) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

LOC110528678(dnase1l3) Expression in each Bioproject

Bar chart with 21 bars.
LOC110528678(dnase1l3) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network