LOC110528683 (slmap)


Basic Information

Item Value
gene id LOC110528683
gene name slmap
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87951429 ~ 87953496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474301.2
TGCACCCCTGGTGTGTCTCTCATTTCCCCCTAGGTTAAACAAACCAATACATGCCCTTTAACTTTCCATGACAACACCACTGCCCTGTAACTCTCCTTTCCCTGTAACTTTCCCCTGGCAACACCGTGTTGAAAGTAACATTATCTGTCCGTCTGACAAGACAACTACAACCATTTCATCAAGGTGGTTGACTGACCACTTATTCCATTGAGGTACCTGGACATGTCGACTGCAACACCGTTCAACATGTGACTGCATGGCAGTGACTGCGCAAAGGTATTGTACCAAGCAAAGTAAAAGCTAGTAGCTATCCGAATGGTTGACAGACTCACCTTGCCAGTCTTGTGATCAAACCAGAGGAGGGCATGGTTCCGTGACAGAACCTTGCAGTCGAACGTGGCGTTGTTCTGAGCCGGTCGGCATCGTGCCACAGAGCGCCCGATCTTGACTGGCTCGTCCAGGTAGACATGACGTTCCTGAAAAGGGTGTGAATTCGGACGACAGGAGAAAACGGCCAGCGCTGAAGGCATTGATGATGGCTTGGGAGTGTTACTCCAACCAGAGACTAAAGACAAGGTTTCTTGATCCAGAATGACAACGTTCTAAGTCTTCAATCATCGGCTGTTAATTCAATTTAGCCTAGCTATTCCGCTGGCTGGCTATTCTATTTTGAGTTAAAGCACGAACTAGCTATCAAACATTATATTCATTTTTTACGTTTTTCAACGAGAAACGTAACCAACACTGgtaaatcaaaaaaaaaaaaaaaaagatttttggGCTCTCTTTCCACAGAGCTACATTACGTCCACTGAATGTTATTCAACACGACTATGTACAGGTCAGATCTCTGACTAGCCAGAATCGCATGACGATAACAATAGTAGCCGTCTAGAAAATATCTAATCACGTCCATCAAAATGTACAGGGAAATAAGCTATATTGAGCAGGCTAGTGTGGCACCCAATCTTTAGCACAGCAACGGATAAATCCAGATTGGTAGTTTATACAAACTATTTGACCAGTGCGGGGTTTCCGATCCCTGCGCCTGGTGATGATACGGCTATTGAAACACAACCGCTGTCAATCTGACCGTGGTTTAACAGGTCATTAATACATTGTTTTTCTATAGAGTTTGTGTCATTACGTTTTGTTTATCCTACGCACTATAGACGGGTGCGATATAAGAACATCTGACCTTGTTtgttagctagctcgctaaccAGCTAATGCAAACCCCTAGCCACTCCCAACTCATGCAGACTAGCAAGCTAATATTGAGTTTCAGGGCCCTGAACAGCAACAAATCTTTCTAATCTCAAAGCTGAAATGTTTCAAACTGCTGCAAAGACAACCCTTAAATCTAAAATGGGTATTGCAGCGGGATGTAGAGATGAATGTGCCTAATACAAAAACCCTGCAGTTTGGCTGTTTGCTGGCAACTACCCAGATatagctataaaaaaaaaaatgtaaaaaaaaaaa

Function

symbol description
slmap Involved in protein localization to plasma membrane; regulation of membrane depolarization during cardiac muscle cell action potential; and regulation of voltage-gated sodium channel activity. Predicted to be located in smooth endoplasmic reticulum. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: sarcolemmal membrane-associated protein isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474301.2 True 1485 mRNA 0.43 2 87951429 87953496

Neighbor

gene id symbol gene type direction distance location
LOC110528678 dnase1l3 coding upstream 292591 87647017 ~ 87658838 (+)
nisch LOC106583810 coding upstream 566106 87346077 ~ 87387283 (+)
nol8 nol8 coding upstream 636313 87293964 ~ 87315116 (+)
ogna LOC106583805 coding upstream 702255 87232952 ~ 87249174 (+)
aspn aspn coding upstream 753420 87169591 ~ 87198009 (+)
dennd6aa dennd6a coding downstream 13073 87966569 ~ 88011485 (+)
il10 il10 coding downstream 100615 88054111 ~ 88058818 (+)
LOC110528686 NA coding downstream 167373 88120869 ~ 88127498 (+)
LOC110528688 LOC106583827 coding downstream 285431 88238927 ~ 88241064 (+)
pdrg1 pdrg1 coding downstream 563939 88517435 ~ 88528083 (+)
G660296 slmap non-coding upstream 7970 87875255 ~ 87943459 (+)
G660327 NA non-coding upstream 29550 87921590 ~ 87921879 (+)
G660317 NA non-coding upstream 37702 87912624 ~ 87913727 (+)
G660263 NA non-coding upstream 71527 87805411 ~ 87879902 (+)
G660297 NA non-coding upstream 74790 87876003 ~ 87876639 (+)
G660321 NA non-coding downstream 58011 88011507 ~ 88014957 (+)
G660371 pde12 non-coding downstream 67506 88021002 ~ 88021785 (+)
G660378 NA non-coding downstream 81072 88034568 ~ 88035208 (+)
G660389 NA non-coding downstream 107360 88060856 ~ 88061212 (+)
G660598 NA non-coding downstream 129335 88082831 ~ 88084576 (+)
G659706 NA other upstream 849159 87100464 ~ 87102270 (+)
G659136 NA other upstream 1429607 86521060 ~ 86521822 (+)
G659058 NA other upstream 1538844 86408702 ~ 86412974 (+)
G658887 NA other upstream 2055280 85895826 ~ 85896149 (+)
G660790 NA other downstream 469268 88422764 ~ 88427927 (+)
G660853 NA other downstream 668817 88622313 ~ 88689342 (+)
G660886 NA other downstream 738398 88691894 ~ 88694076 (+)
G661162 NA other downstream 863589 88817085 ~ 88817655 (+)
G661172 NA other downstream 1019488 88972984 ~ 88975830 (+)

Expression


Co-expression Network