LOC110528688 (LOC106583827)


Basic Information

Item Value
gene id LOC110528688
gene name LOC106583827
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 88238927 ~ 88241064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984332.1
TGCAGAGAGAGGTTGGGGCTTAGGATCAGAGCAGCAGGTCATGTGTTTGAGTAGCAGAAATACAACAAGTTGTCAGCTCGGACAGCAGTACAGAGGGCAGGGCAGGTGAAACAGAGAATGGTGTTTGGTTCTCTGTTAAAGGGATACTGTTACTGGTCCTGTTTCGATGATGAGCAGCATGGCCAGCGTGGGGAGGCCCAAAGCAGTGTCTCATGCTGTCGttgggaaggagaaggagaggacatgGTTTTGTGGCAACGACAGGCTGAAAACAGTGTCTCCTTGCatcaaaggaaaacccagagctGTGTCTCCAGGCATGATAGGGGAGCAGAGGGCAGTGCCTCCTTGGAGGCCAGAGTCGATGTCTCCAGGTGTGGTAGGGAGAGATAGGGCATGGTCTCTTGGTATGCTCCAGAACACCAGCAGCTACAGCAGTGTGACCCCATGCCAGACCACTACTAAGACTATCCGAGTGACGGACATCTTGGACTCCAAACCAGAGCCAACCAAGGCCCCTGTCAAGATCCGGCCCCCTAGCCCACGTCCCCCGCCCCCCAAGGAGCCCATTTTCAGTTGCAACCTGTCCAGTGACCCTCCCGTCCAGCCCATCATAAGACGCAGGGCCCAGTCTTTGCCCTCGGTccacgagagaaacagagaccgcCAGGTACGCTTCGTGGACTCCTTGGGGCTGAAGCTGGAGGAAGTCAAGGTGTTCAGCAAAGGAGAGGAGCCTTGGATTCCCCCCCACGTCTTCTCCAGACTTCTCATGAGCGCTGAGATGAACTCAGGGCGGTCCCTGGAGCTTTCCTTGCCTTACTTCAAACCCTGCTTTCCCGAAAACACGGGCTCCCAGCCAGGGTTCGTTAAGCGCCTGGTGGAGCAGATGGTCTCTCTGGACCAGGTCCTGTGTTCTGAGCTGGGCATCATCGGCAAGGTGCAGGTCCTCAACCTGGCCTTCAACAAGGAGGTGACGATCCACTACTCCTTCACTAACTGGAGGAGCAGTGCTGAGACCAGAGCCTGCTGGGTGGCTACCCTCCACCGGGATCAGATGGAAGGACCAGAGTCTGATGTCTTCAGGTTCCGTCTGCCCGTCCCGCCCTTCATCCTGCTGCCTGGAGCCCAGCTGGAGTTCGCTGTGTGTTACAGAGTGATGGGAGCTGAGTACTGGGACAACAACGATGGGAACAACTACAAACTGTCCTGTCACAGCTACACACTCACTGTGCCCCGGGAGTGTGAGGACAGCATTGTGCACTACACCTGACTGGCCACTAGGGCGCAACCAGTGCTGTAGAGCGATAGAGCTCTATTTCATAGAGGTTAATGGGGAGGACGACAACACAGCTGCGCCAAATGGTCTGACGGTACACAGATCTGCCTGTAGGAATAGAATATAAAATGAAACAAGCCATTCTACTTATTAAAAAATAACTAAAGGTATTTAAAGACATTGGTGAATAGAGAAATAGAGTAAAAGTAATTGAAGCGAAAGCcaatacagac

Function

NR:

description
protein phosphatase 1 regulatory subunit 3D-like

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984332.1 True 1512 mRNA 0.54 2 88238927 88241064

Neighbor

gene id symbol gene type direction distance location
LOC110528686 NA coding upstream 111429 88120869 ~ 88127498 (+)
il10 il10 coding upstream 180109 88054111 ~ 88058818 (+)
dennd6aa dennd6a coding upstream 227442 87966569 ~ 88011485 (+)
LOC110528683 slmap coding upstream 285431 87951429 ~ 87953496 (+)
LOC110528678 dnase1l3 coding upstream 580089 87647017 ~ 87658838 (+)
pdrg1 pdrg1 coding downstream 276371 88517435 ~ 88528083 (+)
LOC110528691 LOC106583835 coding downstream 538300 88777804 ~ 88781772 (+)
cass4 LOC106583834 coding downstream 549706 88790770 ~ 88852155 (+)
LOC110510506 LOC106583833 coding downstream 612032 88853096 ~ 88974945 (+)
LOC118965328 NA coding downstream 733638 88974702 ~ 89002957 (+)
G660664 NA non-coding upstream 6608 88137663 ~ 88232319 (+)
G660665 NA non-coding upstream 37732 88194326 ~ 88201195 (+)
G660669 NA non-coding upstream 40538 88195594 ~ 88198389 (+)
G660674 NA non-coding upstream 42401 88182618 ~ 88196526 (+)
G660670 NA non-coding upstream 43969 88161032 ~ 88194958 (+)
G660699 NA non-coding downstream 2179 88243243 ~ 88243708 (+)
G660702 NA non-coding downstream 6476 88247540 ~ 88248082 (+)
G660703 NA non-coding downstream 9667 88250731 ~ 88251387 (+)
G660705 NA non-coding downstream 12020 88253084 ~ 88255908 (+)
G660711 NA non-coding downstream 24424 88265488 ~ 88266023 (+)
nisch LOC106583810 other upstream 851644 87346077 ~ 87387283 (+)
G659706 NA other upstream 1136657 87100464 ~ 87102270 (+)
G659136 NA other upstream 1717105 86521060 ~ 86521822 (+)
G659058 NA other upstream 1826342 86408702 ~ 86412974 (+)
G658887 NA other upstream 2342778 85895826 ~ 85896149 (+)
G660790 NA other downstream 181700 88422764 ~ 88427927 (+)
G660853 NA other downstream 381249 88622313 ~ 88689342 (+)
G660886 NA other downstream 450830 88691894 ~ 88694076 (+)
G661162 NA other downstream 576021 88817085 ~ 88817655 (+)
G661172 NA other downstream 731920 88972984 ~ 88975830 (+)

Expression


Co-expression Network