LOC110528691 (LOC106583835)


Basic Information

Item Value
gene id LOC110528691
gene name LOC106583835
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 88777804 ~ 88781772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052691.1
CTTGAAGCCCTTCGCCATGTTGAAATTCGTCAACAAGCCCCGTGACGTAATGACGCACCGACATGAGGCATAACGCAAGTGACGTGTCCGCGCAAGCGCATGAACGAAGCGCCGGTTTCAACGAGCCAAGTTGTAATCGTCCCATTGAAGCCTGAGCCGAGATGTTTGGTCCCAAACCGACACTTCGGGACCGCCAGCACCTTTACCAGCTGATCATCGGCCAGCTGTTGGATGAATGTTACACCAACGTGTCTAACAGCCTGATCCCAGAGGTCAAGACATATTCCCACGCATCATTCATTTGATGTTTTATTTAGAACGATGATGGTGCAGTCAGGTGGTCCGACACATCGACCTGGAGTTTCAGCGCCGTCTCCTGAGGCGTCTTGAGTAGGATACTCGCTGTGTGACACCCCATAAAGGTCCCTGTCGTGCTGCCACATACAGCCGAGACGGGCAACCCATTGCTACGAGCTCGGCAGACGCCTCCATCAAATTCTCTGGACGCAGAACGTATGCTGGCCGAGAGTGCCATGCCCACAGAGATGATGATGAATGAGACGGCCCAGCAGAACACGGAGAACCCGCCTGTGATCAGAACACTGCAGGACCATGTTTACGAGCTCACGTCTGGCATTCCACCCCACCGAACAGATTCGGGGTCACGTGACTACATCCTCAATCTGTTTGACTACCCCAAGCCCTCTGCCAAGAGGGCCGTCAAACACATACTCGTCTGTAGGGACAGTCTGGGCCGTCAAACACATACAGGTTAAAAGGATTAGACCTACACAGATCTGTGTCATGTcactaacagtgatgtgtgtttcCTCCTCACAGGAAGCAGAGATGCTGCGGTACATTTCCTTCCACCCGTCAGATACGTTTCTGTAGGTGGGGACGCAGCATCCCATCCTCCGCCTCGATGTGTGTCTCTcttgatgtgtgtgtctctctcttggtgtgtgtctctctcttggtgtgtgtctctctcttggtgtgtgtgtctctctcttggtgtgtgtctctctcttggtgtgtgtctctc
>TU752300
tatttgtcaaacagcagtcaagcatTAATCATCatatcaccagaataagacccccgatatttattggaaaagagcatcaagctcatcaccttgTGCACATAAAAGGTATTTCTAGCATATTTAATTTTACACAAAAACATCCCACCATGTCTTAACAAAAATATGATCACTTCactcgcataaaaactgtggatggaaaccgAGGGAGTTATTTGAAGAGTTTCTGGTCTGGATCTGCCTGTAGATAGATGAACTCTTCCACGGGTGAGGTTGAGCCTGACGACCAACAGCTGTTTCTACAAGTAAACACCATCACAGTACCAAACTCCAGCCCCGGATTCATCTCTACATCCCCCATCTCTACCGCCGACCTTGACCCAGTGTCTGTCCTCTGCAGCAGGCTGACCAGAGCAGGCATCAGTTGTAACTCAAACACCCTGATTCCTCCACAGTGACAGCAGCCAGGTTTAATCCAAGGAAGGTCCGAGGGGGGGTCAGACAAGAAGAGAGGAGACCCGTGCCAGCTGTACCGCAACACCTGCTCCGGACACACAGAGATCCTCTTCATGAAGCGGGAGAACACTGCGTCTCCATGTCTGGGGTTGTCCTTCTcgtacctctcctcccctcctcccccctcagtgCTCCCGATcatccctactccctctctctgctcgtACTCCCTCAGCAGAGTCTCAGCGTGCTCCAGGTCTGACTGACCACCCAGGTCCGTCTCATCCACCACACTGATGTAGAAAGGTCTATAGGTAGGGATGTTACCCGttacctccccttcctcctccaccacctttTCTCCTCCTTCCAGACTGAGTCCCTGAAGCTTGCCGCTCACATCCAGCTCAAAGGAGGTCCCGGTGAGTAAGAGGATCTCAGGATCCTTTCCCCCCATATGAGCTTGGTTCTGGGCCTTGTCCCATCCATCTCCCCCCTCCTGCTTGTCCTCTTCCTCACCCCAGTCATCAGTCCCATCACACCAGTATGTGGTTGTCATGGGAACCTCTTTAACTGGGGCTTGGCCTGGAGGTTGGACCACATGGTTGGTTCTGACCTCTGATTCCAGACACTGAGAACGCAGAACCCTCCAGCTCTCCGGTTGTCCGCTGCACTGTGGCCCGGGGCAGGCGAACACATTCAGGGTGCGGTGGTAGGGAGACGCCGCTAGGGGGCAGTACACCTGCACCACATGGGCCATGACCGCGCTGCATAGCCTACAGCGTGGACGTTGCCATGATATCACTGGAAGCTTGTCCGGTTGGTCGCCAATTTTGTTCGTCAAGTAAGACATCGGATATCGCTTTGAATCGATTTCCCCATCACACAGTCCGATGAGAACTGCCGCGTCAACTGCAGCCATACTATTCTACTATTGTTTAGTTGTTAGAACTGGACTTGAAGCCCTTCGCCATGTTGAAATT

Function

NR:

description
programmed cell death protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052691.1 False 1048 mRNA 0.53 4 88779364 88781772
TU752300 True 1436 lncRNA 0.52 2 88777804 88779390

Neighbor

gene id symbol gene type direction distance location
pdrg1 pdrg1 coding upstream 252918 88517435 ~ 88528083 (+)
LOC110528688 LOC106583827 coding upstream 538300 88238927 ~ 88241064 (+)
LOC110528686 NA coding upstream 651866 88120869 ~ 88127498 (+)
il10 il10 coding upstream 720546 88054111 ~ 88058818 (+)
dennd6aa dennd6a coding upstream 767879 87966569 ~ 88011485 (+)
cass4 LOC106583834 coding downstream 8998 88790770 ~ 88852155 (+)
LOC110510506 LOC106583833 coding downstream 71324 88853096 ~ 88974945 (+)
LOC118965328 NA coding downstream 192930 88974702 ~ 89002957 (+)
LOC110529064 phf2 coding downstream 199946 88981718 ~ 89115525 (+)
LOC118965329 NA coding downstream 272375 89053940 ~ 89055968 (+)
G661130 NA non-coding upstream 17491 88761584 ~ 88761873 (+)
G661118 NA non-coding upstream 30539 88748207 ~ 88748825 (+)
G660886 NA non-coding upstream 85288 88691894 ~ 88694076 (+)
G660820 NA non-coding upstream 139850 88553914 ~ 88639514 (+)
G660828 NA non-coding upstream 155769 88580770 ~ 88623595 (+)
G661157 NA non-coding downstream 13308 88795080 ~ 88797770 (+)
G661164 NA non-coding downstream 43451 88825223 ~ 88825664 (+)
G661165 NA non-coding downstream 43928 88825700 ~ 88826190 (+)
G661166 NA non-coding downstream 44588 88826360 ~ 88826595 (+)
G661167 NA non-coding downstream 45212 88826984 ~ 88827278 (+)
G660853 NA other upstream 90022 88622313 ~ 88689342 (+)
G660790 NA other upstream 351437 88422764 ~ 88427927 (+)
nisch LOC106583810 other upstream 1392081 87346077 ~ 87387283 (+)
G659706 NA other upstream 1677094 87100464 ~ 87102270 (+)
G661162 NA other downstream 35313 88817085 ~ 88817655 (+)
G661172 NA other downstream 191212 88972984 ~ 88975830 (+)
G661489 NA other downstream 397521 89179293 ~ 89180204 (+)
G661491 NA other downstream 399042 89180814 ~ 89182037 (+)
G660854 NA non-coding upstream 154566 88622480 ~ 88623238 (+)
G660848 NA non-coding upstream 161205 88616124 ~ 88616599 (+)

Expression


Co-expression Network