LOC110528694 (LOC106583841)


Basic Information

Item Value
gene id LOC110528694
gene name LOC106583841
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89388793 ~ 89392239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610827.2
GGCCTAACCAAATTTCGTAATTTGTTTAAAGAATTATTTTAGCATGCAAATTCATGTTAATCGATGTTTCCTTCCTCTGGGTCTGAGAGACTGGCTGGTCTGAAGAGAGGAGGGGCATAGAGAGCGTACTCTTATAAACCTTCAACTGCATATCTTCCTCAATCCATAAACACCGTGATGCTAGTCTACTGGTGTAAACAGGGGTATGCTTCATTAGGCTTCTCGATATTGGCCGGAAATTAAACGTGTTGATGAAACGTTTTGGACGTTTGGTTCCATACTGAATTCGAAAGCAAAATTGGGATTCAGCAGCAAAGAAAAGGTTGGAGAAGTTTACGTCTAAGGCGAATAGAAGAAGAGGACGCATCGGATTCTGCAACAGCAAAGGACTGTTATTTATTTCAGTGTCCATTTCAGGATGTTATTAACTTCCTTCATCAGAGTGTCTTCTTCTCTCCCCGTGTTCTAGAATAAGGAAGGACGTATTGTTAATGTGAATGCCTGTCTCTACGGTAGAGAGAGACTAAACCCAAGGAGGAAGAAACAGTGAAGCTTTTATTGCGCTCCGCCTTTCCCGCGTGCTGAACTGAACCATGCAGCATCCCTTGGACTTGGGGGCTCACTATTATCCTCCGGAGGTTCACCCCGACCACCGCTCCCACTCACACCGCTACCGAAGCTTTATGATCGAAGAGATTCTCACCGACCACCCGGACCATAAGGTGTCTACCCCGGCAGGGGAGCTGCTCAAGTTCGGAGTACAAGCTCTGCTCTCGGCGCGGCCATACCACAATCACCTGGTTTTGAAGGCAGACCAATCGGGTATCCTGAAGTTCCCGATGTCGCCACTCTCCTGCTCACTGGGATCACCGTTAGGCTCCGCTCTCCTATCCGGGGCTCCGGGGCTCCACGGCGGCTCAGCTTCCCACCACCTCCCGTTGGACCTCCACCTCCGGAGCAAGCTGGAGCATGGCGGAGACGGCAACAGCAAGACCAAGAAAGGCCGCCGGAGCAGGACGGTCTTCACTGAGCTACAGCTAATGGGCTTGGAGAAAAGATTTGAGAAACAGAAGTACCTTTCAACGCCAGACAGAATAGATCTGGCTGAGTCTCTGGATCTGAGTCAACTACAAGTCAAGACCTGGTACCAGAACAGACGAATGAAATGGAAGAAAATAGTCCTACAAGGAGGAGGATTGGAATCTCCAACCAAACCAAAAGGCCGTCCTAAGAAGAATTCCATCCCGTCGAGCGAGCAGCTTTCGGAGCAGGAGAGGTCTGGAGACGTCGACCGTCAGTCGGACGGTTCCACCTCGTCACATTCAGACACTAACCAAGAGGAATAATAATGTTGGTGCTCCGACTAACTGACAACTCTCTGAAGACGTTCACCAGACGTTCATACAGCCTCTGGGATGCGTAATGGTGGTCGACGGTTGAATCGAAGTGCCTTGCCCTTGACTTCGATATTTTTGGCACTTACATAGAGAGACTGATGTTGGCCTCCCGTAGGAGAGGCGGAACTCTATTTTTATTACTAGTATCGTCCTCCAGACACTTCCTCCTTGGGACGAGGTTACTTTTTGTATGCTATTGTCACATCTTCTTTCGTAATCAATGTGTTGTCAATACCTATGCTTCCATCCGCGTCACGCCGAACTAACCGTTATGGAGCGGttgcggagggagggagggagggacacacaTCG

Function

NR:

description
homeobox protein BarH-like 1

GO: NA

KEGG:

id description
K09361 BARX; BarH-like homeobox

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610827.2 True 1709 mRNA 0.49 4 89388793 89392239

Neighbor

gene id symbol gene type direction distance location
pdcd2l LOC106583835 coding downstream 609323 88777751 ~ 88779470 (-)
LOC110528689 NA coding downstream 746244 88585172 ~ 88642549 (-)
dyrk3 LOC106583824 coding downstream 934703 88421430 ~ 88454090 (-)
LOC118965327 NA coding downstream 969193 88417178 ~ 88420395 (-)
LOC110528687 LOC106583825 coding downstream 1043048 88253063 ~ 88345745 (-)
LOC110528698 wnt7a coding upstream 195858 89588097 ~ 89672181 (-)
LOC110528697 LOC107727849 coding upstream 307373 89699612 ~ 89827294 (-)
hdac11 hdac11 coding upstream 494333 89886572 ~ 89946188 (-)
LOC118965398 NA coding upstream 867414 90259653 ~ 90259806 (-)
LOC118965428 NA coding upstream 868691 90260930 ~ 90261083 (-)
G661641 NA non-coding downstream 11571 89377017 ~ 89377222 (-)
G661607 NA non-coding downstream 99706 89284875 ~ 89289087 (-)
G661573 NA non-coding downstream 178979 89209499 ~ 89209814 (-)
G661504 NA non-coding downstream 196068 89192423 ~ 89192725 (-)
G661503 NA non-coding downstream 196553 89192035 ~ 89192240 (-)
G661664 NA non-coding upstream 1343 89393582 ~ 89394699 (-)
G661745 NA non-coding upstream 6459 89398698 ~ 89411108 (-)
G661751 NA non-coding upstream 20292 89412531 ~ 89413012 (-)
G661753 NA non-coding upstream 22647 89414886 ~ 89415378 (-)
G661754 NA non-coding upstream 24142 89416381 ~ 89416593 (-)
G661335 NA other downstream 290215 88831729 ~ 89104274 (-)
G661426 LOC106583832 other downstream 327312 89053076 ~ 89061481 (-)
G661128 NA other downstream 628855 88759493 ~ 88759938 (-)
LOC110528667 cenpp other downstream 2095038 87114104 ~ 87293966 (-)
G661773 LOC106583842 other upstream 65912 89458151 ~ 89459700 (-)
G662321 NA other upstream 284850 89677089 ~ 89681607 (-)
G662500 iqsec1 other upstream 769899 90162138 ~ 90162948 (-)
G662629 NA other upstream 1060048 90452079 ~ 90453988 (-)
G662819 NA other upstream 1350353 90742592 ~ 90764290 (-)

Expression


Co-expression Network