LOC110529066 (LOC106583848)


Basic Information

Item Value
gene id LOC110529066
gene name LOC106583848
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89479837 ~ 89492439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611208.2
ATGGAAGTCCAACTAGGTAAAGAGCTGAGCTGTCCTGTGTGTTTAGACGTCTTCAGTCCACCTGTTATAGAGTTGTGTTGTAGTCATAACTACTGCAAGAAGTGTATTCACCAGACCCTCATCGCCCAGAACTGCAACAAGCCCCAGGACAAGTTCATCTGCCCCATGTGTAGAAAGGTGAACATCTTACCTGACAAGGGACTCAACGGGTTGAAGAGGAACATGTTTGTTGAGAACGTCGTGGCGATATtgaaggaaaggacagagagtaACGAGGCCAAGCAGCAAGCTCTGAAGGAATTCATGTGCCCTGATCATAATGAAATCATGAATCTGGTGTGTCTGCAGGATAACACGTTGATCTGCGCAGGATGTAAACTGTTTGGCCACCACAGCACCCATGCAGTGTCCAAGCTATTTGATGTGTACGAGCAGAGGAAGGAGGGCTTCGCCAAACAGATGAAGAGTCTGCTGGACAAACATGAAGCAAACAAAAAATGCATTGAGGGTTTGGTTGGCCAGAAGCAGGACCTCCTCTCGTCCTCTAAGGACATTGAGGCTTTCCTGAAGAAGCTGGGGGACAGTCTGATCTGGGAGATCCAGAGGAAGGTGAGCCACATGGTCACGAAGGTCCACACGGAGTGCTCCATGAGGTGCCGTTGCCTCCAGGATGGCATGGACGAGCTCAGCGCTCCCCAGAAGGTCCACACTGAGATGAAGAAACATGTAGATGGCAGTAAAAGCCCAGTTGACTTCCTGAAGGGGGAGAGGCGTCTGCACAGAGAGGCTGAGAAGGTCCTGGAGCCAGTGGACTGGTCAGCCCAGTATAGAGAGTCCATCTCCCTGGGTCAGTACGTAGAGGACCTGATGTCCGGCATTGACATCCGCAGGATGGGCACCGTGAGAGGGAAGAGCCTGGTCAAGAACATCTCTCAGGACCTCAAGGCTTGGAGgtctggGAGGACCAGCTTTGACCCGATGGCCTACAGGAGTTTGGACGTGATGCTGACCAAGACAGCCTCCCTGGTGGAGCAGGGCGAGGACGACTCAGATGACTCAGACTCTGACACCTGCCTCAGCTGGGAGACACACAGCACTTCTGAAGAGGAAGGGGCCACCGGAGACACCAAACAGAAAGCTTGA

Function

NR:

description
E3 ubiquitin-protein ligase Midline-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611208.2 True 1143 mRNA 0.52 7 89479837 89492439

Neighbor

gene id symbol gene type direction distance location
ptpdc1a LOC106583842 coding upstream 4954 89398875 ~ 89474883 (+)
LOC110529064 phf2 coding upstream 364312 88981718 ~ 89115525 (+)
LOC118965329 NA coding upstream 423869 89053940 ~ 89055968 (+)
LOC118965328 NA coding upstream 501243 88974702 ~ 89002957 (+)
LOC110510506 LOC106583833 coding upstream 504892 88853096 ~ 88974945 (+)
iqsec1b iqsec1 coding downstream 603583 90096022 ~ 90162648 (+)
pparg LOC106583866 coding downstream 797662 90290101 ~ 90409035 (+)
tsen2 tsen2 coding downstream 921280 90413719 ~ 90459450 (+)
LOC110528705 mkrn2 coding downstream 991583 90484022 ~ 90506869 (+)
LOC110528704 cnbp coding downstream 1026368 90518807 ~ 90562974 (+)
G661692 NA non-coding upstream 8446 89467984 ~ 89471391 (+)
G661690 NA non-coding upstream 23079 89456243 ~ 89456758 (+)
G661681 NA non-coding upstream 65136 89414148 ~ 89414701 (+)
G661677 NA non-coding upstream 69120 89410224 ~ 89410717 (+)
G661674 NA non-coding upstream 78180 89401336 ~ 89401657 (+)
G661731 NA non-coding downstream 45333 89537772 ~ 89538114 (+)
G661737 NA non-coding downstream 50619 89543058 ~ 89544309 (+)
G661738 NA non-coding downstream 53340 89545779 ~ 89547479 (+)
G661827 NA non-coding downstream 78160 89570599 ~ 89571671 (+)
G661835 NA non-coding downstream 86979 89579418 ~ 89579886 (+)
G661696 NA other upstream 9718 89469829 ~ 89470119 (+)
G661541 NA other upstream 223413 89255760 ~ 89256424 (+)
G661491 NA other upstream 297800 89180814 ~ 89182037 (+)
G661489 NA other upstream 299633 89179293 ~ 89180204 (+)
G662026 NA other downstream 506838 89999277 ~ 89999911 (+)
cfap92 LOC106583852 other downstream 1319497 90740664 ~ 90885403 (+)

Expression


Co-expression Network