LOC110528697 (LOC107727849)


Basic Information

Item Value
gene id LOC110528697
gene name LOC107727849
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89699612 ~ 89827294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984360.1
GAGGTCCAGCCAGAGATAATTAGTCAGAGAGCAGCGGTGTTCGGGCGGTATGTACTGTACTAACCAGAGCTTTTCTGCAGCCTAGTTTCTTCCATCCCATGGATTGAATCATCCCTTGCGTGGAGGCCAAGaGTGGTAGTGATCcctgagaacagagagagtgtgtctgaATCCTTGAGGAGGACTTCAAAGCTAAACCTCAAAACACTGTGAAAAACATCTTCACTCTCATTGCTTTCAATCCATCTGGTGTCATCATGGCTGGTCCCCCACCAGTTGAACAGACATTACGTCACAGTGCCCTTGTCCTCCTCCTGCTGAGTGTGAGTGGTAGCCTGGGCCAGAAGGACTGTACAGGTGTAGACTGCCCTGATCTGAGTAACTGTATTGAGGAGCGGCTGGAATCTGGGGCTTGCTGTACTACCTGCGTTCAGACTGGGTGTACCTGTGAGGGCTACCAGTACTACGACTGTGTCCATGCCGGCTTTAAGAATGGTCATGTTCCCGAGGGGCAGTCCTACTTCGTGGACTTCGGGAGTACGGAGTGTTCGTGCCCGGAGGGTGGCGGACGGATTGGCTGTCACTTCATGCCCTGTCCTGACGTCCCTGCTAACTGCATCGAGGTGTCTGAGCCGGCTGACGGCTGTGTCACCTGCGAACGTATCGGCTGTGTCCATGACAACCAGAAGTACGAGGCCGGACACTCCTTTCACCTTGTTGCCTGTGAGGCGTGCCACTGTCCGTCCGAAGGAGGTGAGCTGATGTGCTACCCTGTCCCAGGCTGTGATCCCAGCAACCCCGGTGACCCCCACAAACCTATGCTGGCCACCATACAGGAGGGTCACCCTACATATCCCCCTATCCatccctacctcacacaggacaaactgagagagacggagagagaccgaCATGCTAAACCCCCCTTTAACACACAGGAGACACAGGCTATAGGATTACCCCCCTACAACCGTCCTCCATACCCTTTCAACGGGCCAAAACTACCACCATCCAACAGCCCACACCTCCCCCCGTTCCCGATTGATGCCCCTATTCCCTCGGACCACCTGCCCCTGTTCAAACCAGACCACATGACTGAGGATGGGGACTATGACTACCCTACTACAGACGCATCAGAACCACCTGTGAATGATCTGGCCTACCCTACACCGTCCTCCTCTATCATCTCTGTCTCCTACCCTGGGACAGGGGCTACACAGCCGCGCCACGACAGGGGTAATAGTAAGAGCTACGATAAGCCTTATGATTGGACTGATAACGGCTATGGTAACAAGGAATATGATAGTAGAGATAGGCAGGAGCTGAGGGAGATCTATGGAGTCCATGAGCCAACCACAGACAGTATGGTTACAGACAGAGTAGGACTGAGAGACAGGctagggcagacagacagatctacagagacagacagatctcagcaTATAGGTAGGGTGAAGCAGACAGACAAGCTAAAGAAAACAGACAGGTTGATGACATTTGGACTTTACAAGGCCACCACAGATGGGTTCGGAGAGACAGGCAGCCCCGTTACTGACAGCCCAGTGACAGTAGAACAGACCACTTCTAGCCAGCTTGAAGACACCACAGTAGAGACCACCTCCCGCAGTACCAGCTCCAGCCACCAGGACACCACCTCGAACTGGAACAGACTCTCAGAGAGCCAGATTTACCCTCACTCTCAAGGGGCCAGTGCTGGGGACGCACTGGAGATatgggatagagggatgggggagcaggaggaagaggaggagagagtagattCATTGGAGAATACCACAGGACCTGGGTGGAGAGACGTGTCTTATGATGGAGATTTGGAtaaacaggggaggagaggaggagaggaggagagagagaagagtaccCCTAGCAACCATGTGAAGGATGCAGGTGTCAGAGAACCTGGAAGTCACCAGGACAAcactacagtagaacacagtacTACATCCCCCAGAAGGAATCGGGACCACATCACCCACAGGAAGCCTCACCACCACACCCTGACCCAGAAGCCTAAGCCTCACAATACTACCCCTAGGGAGTATGAGGTCGtcacagacagaactacatctCCCAGACTGCTTGACCACAACACAGATAGTACTACATTTCCTAGATTGCCTGACCACCACACCTTGACCAGGAAGCCTGACCACTACACAACCCCCAAGGAGTATGAggtccacacagacagacctatatATCCCAGACTGCCTGAACACCACACTGTCAAAACTTCAACTCCAAGAGAGCTTGATGTCAACACCGACAGAACTACAATCCCAAGACAAGCTGAGCACCACAGCCTCAACAGACAGCCTGATCACCATACCCTGACCAGGAAGCCTGACCCCTATGCAGTCAGAACTACAACTCCCAGAGAGCTGAACCACCACACAACCCACAGACAGCCTGATCACTATACCCTGACCAGACAGCCTGATCCCGATCACCCAGCTCCCAAGGACCCAGAGCAAGAACATACTCCTCCCAGGGTGAGATTCAGCCCAACCAGCCAGCCTTCTCTCAGGGTATCAGTTGATCTAGGTCACCATGGAAGTGAGCCTCTCCATAAGCAGTCCCAGACACTATTCAAACTGGAGAACAATGATGCGGAGGAGcatgagaaggaggaggaggagaggggatatgTCTTTCTCCCAAAAACTCAGGAGGCTGGTCCTGGTCCGTCTTCTCTCTACGTGGTGGAGAGCTGCTGTGAGGTGGGCCAGAGATGGGCATCAGAGAACCAACACTGTAACAACATGCCGTTGTTGAAGGACGATAAACACTCTGTCTGCAGtatATCCCAGCAGCAGTGTTGTCAGAATGTTCTAATGGAGACCAGGTGTCTGGCAGGTATCACTGCTGCTaaaggaggagacaggtgtgagGTCAACCAGGAGAGCCAGTGTGCTGCAGACTCTTACCaggtgtgCTGCAGTTGTTGTGTGCTGGGTCTGGCTCTACATGCTGAAGGTAGAGGGTGTGATGCCCACCAGTACCTGGGGAACCCCTGTGGTCATGTCCTGCTCACCTGCTGTGAagtggaggggctcagccctaaccctaaccaaacacagaggaggaaggagaggcccAGACCTACTACCCTGTCTGAGAAAGatgtgaatgagtgtgtgaccAGCACGCACAGTTGCCAGGCCAGTGAGCGCTGTGTGAACACCGTGGGATCGTTTGTGTGTGAGAGGACCGTCACTTGTCCTGCAGGCTTCCAGCTCAGGAACCAAGTCTGTGAGGATATTGATGAGTGTATGGTGCGCAGCCACAACTGTGGTCAAAGGTTTGCGTGTGAGAACACGGAGGGCTCCTTCCTGTGTAACCCTAAACAGAGATGTCTCACCGGCTTCACCCAGGACTCACATGGAAACTGCATTGaTATGAATGAGTGCAGTAGTCTATCTGATCCGTGCAGTGCTGGTTTTCACTGTATCAACACTGTGGGCTCCTATACCTGTCAGAGGAAAGTTATCATGTGTAGTCAGGGATACCACTCCAGCCCTGATGGAACACGCTGCATCGATGTGGATGAATGTCAGACAGGTAACCATGGGTGTGGTGAGGGCCAGATCTGTCATAACCTCCCTGGTAGCTACCGCTGTGACTGTCAAACAGGCTACCTGTACGATGCACTACGCCAGGTCTGCAGcgatgTGAATGAGTGTTGGAGCTACCCCGGCAGGCTATGTGCTCAGACGTGTGAGAACAGTCCAGGATCCTACCAGTGTTCCTGTACAGCAGGCTTCTCTCTGGCCTTCGACGGGAAGAACTGTGAAGaTCTGAATGAGTGTGACTCTAGTCCGTGTGGTCAGGAGTGTGCTAACATCTATGGGTCCTACCAATGTTACTGCAGACAGGGCTTCTACCTGAAGGAAGACGGACACACCTGTGAAGATATTGATGAGTGTTCCCAGAATATTGGCAacctgtgtgtgttccagtgtgtgaACATCCCAGGTAGCTATCAGTGTGCCTGTCCCCCTAACGGATACACCATGTCAACCACAGGACACACCTGCAGAGATATTGATGAGTGCACAACAGGAGTTCATAACTGCTCTACAGAACAGACCTGCTTCAACGTCCAGGGAGGGTACaggtgtctctctttctcctgccctccatattacagaaAGGTTTCAGATACtcgtTGTGAGCGCAGTGGTTGTCCAGCTAACTCTGTAGACTGCCAGACCTCTCCTCTGAGAATCACCTACTACCAGCTGAGCTTCCAGATGAACATTGTCATCCCCACTCAGATCTTCAGGATTGGCCCCTCCCCCGCCTACAGGGGAGACAACATTGCTATCTCCATCACCCACGGTAACGAGGAGAACTACTTCTCCACGCGGAAGCTGAACAGTTTTACGGGGGCGGTGTACCTGCAGCGGCAGGTGAGACAGCCGAGAGACTTCCTGATCGATGTAGAGATGAAGCTGTTGAGACAGGGAGCCTTCACTACCTTCCTGGCCCGGATATATGTCTTCATCACCTCTAACACACTGTAGAGTCTgttgagacagagagactccactACCTTCCTGGCCCGGATATATGTCTTCATCACCTCTAACACACTGTAGAGTCTGTTGAGACAGAGAGCCTCCACTACCTTCCTGGCCCGGATATATGTCTTCATCACCTCTAACACTGTCTAAACACACACCATCCCAGAACAGACTGTCACCCACCACTTCTCTAATATTCATATGGTGATAAACTTTATACTTGTAACttacatatatatatttcatcatacgatcttatccagagccacttacaaaAGCAAGTGCATAGTTTTTCATACTGGTCctccgtgggaatcgaacccacaacccaaggaccgtgctctaccaactaagcCACGCATTTCAAAAACCGGATTGTTACTAAAGACTAAGTTAGTCTTCTGTTTTTATACAAAATCATTTTTCTGAGTCTTTTATAATGTAATCTCTTTTAATGCATGTGTCTCAAGCTGTGTGGTTTGACTCTGCCAAGGTGGTCCCCAGAGTGCTAGGCTCTGTCCTCCTGCTCCTTAACCTCTGGAACCGTCCAATCCCAACATGAACTTTCAGAGGTTTTGAAGCTACTGAATAGAATGGAGAACCCTGGAGCAGCTCTTAGACCAGAGCTTGTAGACACACTGAGGGtacctctgtatccctctctctccccgctctctttcctcgctgtctctccccgctctctctctccgttctctctctccgctctctctctccgctctcgtTCTCCGCTCTCGCTCTCCGCTGTCT

Function

NR:

description
uncharacterized protein LOC110528697

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984360.1 True 5318 mRNA 0.52 15 89699612 89827294

Neighbor

gene id symbol gene type direction distance location
LOC110528698 wnt7a coding downstream 27431 89588097 ~ 89672181 (-)
LOC110528694 LOC106583841 coding downstream 307373 89388793 ~ 89392239 (-)
pdcd2l LOC106583835 coding downstream 920142 88777751 ~ 88779470 (-)
LOC110528689 NA coding downstream 1057063 88585172 ~ 88642549 (-)
dyrk3 LOC106583824 coding downstream 1245522 88421430 ~ 88454090 (-)
hdac11 hdac11 coding upstream 59278 89886572 ~ 89946188 (-)
LOC118965398 NA coding upstream 432359 90259653 ~ 90259806 (-)
LOC118965428 NA coding upstream 433636 90260930 ~ 90261083 (-)
LOC118965397 NA coding upstream 434922 90262216 ~ 90262369 (-)
LOC118965427 NA coding upstream 435657 90260405 ~ 90264787 (-)
G662327 NA non-coding downstream 13956 89683888 ~ 89685656 (-)
G662305 NA non-coding downstream 49231 89646770 ~ 89650381 (-)
G662304 NA non-coding downstream 53213 89645879 ~ 89646399 (-)
G662292 NA non-coding downstream 87316 89606311 ~ 89612296 (-)
G662289 NA non-coding downstream 99477 89599674 ~ 89600135 (-)
G662386 NA non-coding upstream 4542 89831836 ~ 89832038 (-)
G662387 NA non-coding upstream 6245 89833539 ~ 89833784 (-)
G662394 NA non-coding upstream 19476 89846770 ~ 89846993 (-)
G662400 NA non-coding upstream 28567 89855861 ~ 89856184 (-)
G662401 NA non-coding upstream 30008 89857302 ~ 89857721 (-)
G662321 NA other downstream 18005 89677089 ~ 89681607 (-)
G661773 LOC106583842 other downstream 239912 89458151 ~ 89459700 (-)
G661335 NA other downstream 601034 88831729 ~ 89104274 (-)
G661426 LOC106583832 other downstream 638131 89053076 ~ 89061481 (-)
G661128 NA other downstream 939674 88759493 ~ 88759938 (-)
G662500 iqsec1 other upstream 334844 90162138 ~ 90162948 (-)
G662629 NA other upstream 624993 90452079 ~ 90453988 (-)
G662819 NA other upstream 915298 90742592 ~ 90764290 (-)

Expression


Co-expression Network