hdac11 (hdac11)


Basic Information

Item Value
gene id hdac11
gene name hdac11
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89886572 ~ 89946188 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984361.1
AGTGCGTATTCGACGTGCGCATGGAAGGAAGCGCTGTGGGCTGCATTACAATGATCTGATCTCTTTCTGTTCTGCTAGCTGTTGGATATATGACTAACAGAATGATATCGGACAACCACAATCTAACGTTGCATTTGTGAAGATATCAAAGCATTCGAATAAAATATTTTAGCGTCAACTAATAGACCAAAGAGCGGTTATGATGTGTAACAGTAGTCACGGCACCCAGCTATACCTGGAGGTGCCGTCGTCATGTCTGCCTATCGTCTACTCTCCAGTATACAACATCACCTTCATGGGCCTTGAGAAACTACACCCCTTCGACAGTGGGAAGTGGGGGAAAGTCATCCACTTCCTAAAAGAGGAGAAGTTGATCAGTGATGGGAGCATCGTTGAGGCACGGGAGGCTACAGAGGAAGACCTGCTGGTGGTTCACACAAAACGCTACCTCAACAGACTCAAGTGGTCCCTGGTTGTAGCGACCATCACAGAGATCCCTCCCCTCCTATGCCTACCTAACTTCCTGGTTCAGAGACGGGTCCTGAGACCACTCAGAACGCAGACCGGAGGCACCATCATGGCAGGGAAACTGGCTGTAGACCGAGGCTGGGCCATCAATGTAGgTGGAGGTTTCCATCATTGCTCCAGTGACAAAGGAGGAGGATTCTGTGCCTATGCCGACATCACCTTAGCTATCAAGTTTCTGTTTGAGAGGGTGGAGGGAATCTCCAGAGCCACCATCATAGATCTGGATGCACACCAGGGGAACGGTCATGAGCGTGACTTCCTGGATGACAGACGTGTTTTCATCATGGATGTCtacaaccgatacatctaccctggagacggatacgcaaagagAGCCATAAAGCGTAAGGTGGAGCTGGACTGGGGGACAGAGGATGATGAGTACCTCCAGAAGGTAGAGCTCCACTCGGAGGGTGCTCTCAATGAGGTCCGGCCTGACATCATAGTATACAACGCCGGGACAGACATCCTAGACGGAGACCCCCTGGGAGGgctggctatctcaccacagGGCATCATAAAGAGGGATGAAATAGTGTTCCGGGCAGCACGAAGGAGAGGGATTCCCATCCTGATGGTGACATCTGGTGGATACCAGAAGAAGACTGCTCGCATCATCGCTGACTCCATCATCAACTTGCGACGCCAGGGCCTGATTGGAGGGAATGAGGATGGGGAGGTGGCAGAGGAGTGTGTGGGCGGAGTCCCCCTCGTGATGAGCAGctctgactcctccccttcctctgtgTCAACAGGACCAGCCCCCAACACCATCTGACTGGAACTGAACATGAGTTGGATCTTAGGGTCCAGAGATTCTCCTGGAACCGTAGGACACTAGAGGAAAAATATTATGCTCGGGAATAGAGTGCCTTTTCAGACTTCCCCACGATCTTACTGATGCCCAAGGTGACTGTGGCAGGGGTCGGTAAGGGTACAAGGTTGgtcgggtagcctagtggttaagagtgtttggccagtaatttgaatccctgagctggctAGGTGAAAAATCTACCGATGTGCCCTCGAGCAAAGCACTTAACACTAGTTGCTCCTGTAAGTCTATGGATAACAGTGTCtgttaaattactaaaatgtaaatgtctgagacattctgtagtggtaCGGGTTGTTTtgagacattctgtagtggtaCAGGGTTGGActgagacattctgtagtggtaCAGGGTTGGActgagacattctgtagtggttcGGGGTTGGActgagacattctgtagtggtaTGGGGTTGG
>XM_036984363.1
AGTGCGTATTCGACGTGCGCATGGAAGGAAGCGCTGTGGGCTGCATTACAATGATCTGATCTCTTTCTGTTCTGCTAGCTGTTGGATATATGACTAACAGAATGATATCGGACAACCACAATCTAACGTTGCATTTGTGAAGATATCAAAGCATTCGAATAAAATATTTTAGCGTCAACTAATAGACCAAAGAGCGGTTATGATGTGTAACAGTCACGGCACCCAGCTATACCTGGAGGTGCCGTCGTCATGTCTGCCTATCGTCTACTCTCCAGTATACAACATCACCTTCATGGGCCTTGAGAAACTACACCCCTTCGACAGTGGGAAGTGGGGGAAAGTCATCCACTTCCTAAAAGAGGAGAAGTTGATCAGTGATGGGAGCATCGTTGAGGCACGGGAGGCTACAGAGGAAGACCTGCTGGTGGTTCACACAAAACGCTACCTCAACAGACTCAAGTGGTCCCTGGTTGTAGCGACCATCACAGAGATCCCTCCCCTCCTATGCCTACCTAACTTCCTGGTTCAGAGACGGGTCCTGAGACCACTCAGAACGCAGACCGGAGGCACCATCATGGCAGGGAAACTGGCTGTAGACCGAGGCTGGGCCATCAATGTAGgTGGAGGTTTCCATCATTGCTCCAGTGACAAAGGAGGAGGATTCTGTGCCTATGCCGACATCACCTTAGCTATCAAGTTTCTGTTTGAGAGGGTGGAGGGAATCTCCAGAGCCACCATCATAGATCTGGATGCACACCAGGGGAACGGTCATGAGCGTGACTTCCTGGATGACAGACGTGTTTTCATCATGGATGTCtacaaccgatacatctaccctggagacggatacgcaaagagAGCCATAAAGCGTAAGGTGGAGCTGGACTGGGGGACAGAGGATGATGAGTACCTCCAGAAGGTAGAGCTCCACTCGGAGGGTGCTCTCAATGAGGTCCGGCCTGACATCATAGTATACAACGCCGGGACAGACATCCTAGACGGAGACCCCCTGGGAGGgctggctatctcaccacagGGCATCATAAAGAGGGATGAAATAGTGTTCCGGGCAGCACGAAGGAGAGGGATTCCCATCCTGATGGTGACATCTGGTGGATACCAGAAGAAGACTGCTCGCATCATCGCTGACTCCATCATCAACTTGCGACGCCAGGGCCTGATTGGAGGGAATGAGGATGGGGAGGTGGCAGAGGAGTGTGTGGGCGGAGTCCCCCTCGTGATGAGCAGctctgactcctccccttcctctgtgTCAACAGGACCAGCCCCCAACACCATCTGACTGGAACTGAACATGAGTTGGATCTTAGGGTCCAGAGATTCTCCTGGAACCGTAGGACACTAGAGGAAAAATATTATGCTCGGGAATAGAGTGCCTTTTCAGACTTCCCCACGATCTTACTGATGCCCAAGGTGACTGTGGCAGGGGTCGGTAAGGGTACAAGGTTGgtcgggtagcctagtggttaagagtgtttggccagtaatttgaatccctgagctggctAGGTGAAAAATCTACCGATGTGCCCTCGAGCAAAGCACTTAACACTAGTTGCTCCTGTAAGTCTATGGATAACAGTGTCtgttaaattactaaaatgtaaatgtctgagacattctgtagtggtaCGGGTTGTTTtgagacattctgtagtggtaCAGGGTTGGActgagacattctgtagtggtaCAGGGTTGGActgagacattctgtagtggttcGGGGTTGGActgagacattctgtagtggtaTGGGGTTGG

Function

symbol description
hdac11 Predicted to enable histone deacetylase activity. Predicted to act upstream of or within histone deacetylation. Predicted to be located in nucleus. Orthologous to human HDAC11 (histone deacetylase 11).

NR:

description
histone deacetylase 11

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11418 HDAC11; histone deacetylase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984361.1 False 1788 mRNA 0.51 10 89886572 89946188
XM_036984363.1 True 1785 mRNA 0.51 10 89886572 89946188

Neighbor

gene id symbol gene type direction distance location
LOC110528697 LOC107727849 coding downstream 59278 89699612 ~ 89827294 (-)
LOC110528698 wnt7a coding downstream 214391 89588097 ~ 89672181 (-)
LOC110528694 LOC106583841 coding downstream 494333 89388793 ~ 89392239 (-)
pdcd2l LOC106583835 coding downstream 1107102 88777751 ~ 88779470 (-)
LOC110528689 NA coding downstream 1244023 88585172 ~ 88642549 (-)
LOC118965398 NA coding upstream 313465 90259653 ~ 90259806 (-)
LOC118965428 NA coding upstream 314742 90260930 ~ 90261083 (-)
LOC118965397 NA coding upstream 316028 90262216 ~ 90262369 (-)
LOC118965427 NA coding upstream 316763 90260405 ~ 90264787 (-)
LOC110529068 LOC106583861 coding upstream 518458 90464646 ~ 90466537 (-)
G662397 NA non-coding downstream 3117 89882251 ~ 89883455 (-)
G662407 NA non-coding downstream 6097 89879122 ~ 89880475 (-)
G662409 NA non-coding downstream 8701 89875054 ~ 89877871 (-)
G662405 NA non-coding downstream 20103 89865565 ~ 89866469 (-)
G662404 NA non-coding downstream 25093 89861215 ~ 89861479 (-)
G662431 NA non-coding upstream 27874 89974062 ~ 89974285 (-)
G662433 NA non-coding upstream 30970 89977158 ~ 89977365 (-)
G662436 NA non-coding upstream 33520 89979708 ~ 89979936 (-)
G662438 NA non-coding upstream 35918 89982106 ~ 89982411 (-)
G662439 NA non-coding upstream 36795 89982983 ~ 89983227 (-)
G662321 NA other downstream 204965 89677089 ~ 89681607 (-)
G661773 LOC106583842 other downstream 426872 89458151 ~ 89459700 (-)
G661335 NA other downstream 787994 88831729 ~ 89104274 (-)
G661426 LOC106583832 other downstream 825091 89053076 ~ 89061481 (-)
G661128 NA other downstream 1126634 88759493 ~ 88759938 (-)
G662500 iqsec1 other upstream 215950 90162138 ~ 90162948 (-)
G662629 NA other upstream 506099 90452079 ~ 90453988 (-)
G662819 NA other upstream 796404 90742592 ~ 90764290 (-)

Expression


Co-expression Network