LOC110528704 (cnbp)


Basic Information

Item Value
gene id LOC110528704
gene name cnbp
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 90518807 ~ 90562974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984377.1
attggatgccaaccgccgttaaacctcatcgaagaagAAGGACCGTGTGCAAACCGCGCGTGACgcagaaaggagggagggacCGATAACAAACAAACAGGAACAGTCACTTAGCTGAGGAACACGTGGAGATGAGTAGTAATGAGTGTTTTGGATGCGGCCGCACCGGCCACTGGATCAAGAACTGTCCGAATGCCGGGCGGGGACGAGGCAAGGGCCGCGGGAGGGGGAAAGATCTGTTCTGCTATCGCTGTGGCGAGCCTGGGCATGTTGCCAGGGACTGTGAGAGGACTGAGGATGCGTGCTACAACTGTGGTCGTGGAGGACACATTTCCAGAGACTGTAAGGAGCCCAAGAAGGAGAGGGAACAGGTCTGTTACAACTGTGGCAAGGCTGGCCACGTGGCCCGAGACTGTGACCATGCCAACGAGCAGAAGTGCTACTCCTGTGGAGGTTTTGGACACATCCAGAAGGGCTGTGAGAAGGTCAAATGTTACAGGTGTGGTGAGATCGGCCATGTTGCCGTCCAGTGCAGCAAGGCCAGCGAAGTCAACTGCTACAATTGCGGAAAGTCTGGTCACCTGGCTAAAGAATGCACCATCGAGGCCACGGCCTAGCACTCTGCTGCCTTCCTACGCCCCTCCTTTTTCACATGGATGATTGTATTATTTTGTCTGAAACCTGCCCTCTGGCTACGGAGGTTTCTCCCAGACCAGTCTGCTGTAAAGTGCTGAATAATACACTTTCTGTATTTAATCCAAAATGTTTACTTTGGTAGAGGTTAATGTACAATGGTTTGTTAAAGAAGCCATTTTCCATGCCACTGGTGACAAGGGATGAGTTCTGAGTGGATGTCCTCCCCACCAGGTCCGGGGAAACCAGCCCTTCAAGTCAGAATGAAAGTTTGTCGGAactttttagttttttggaaCATAACGGACTAGACCTGAGACAGCAGCACCACCCAGTGGTCGTTATGGGTTCAGTCCGTCCGACAGCAGCATGCAGACAGACCAGGACCAAACCCGTCACAACATGGTGTATGAATACAGACGGTCATAGCTAATTCACAAGaaaatacaaatatttgtttTTGTACAGTTAGCTGCTGAGTGTCAGAATCAGTCTTGATCCAGTAGTAAGTTAATGTGTGTTATATAACCATGGAAACAGATCAGAAAAAGAAAGGCTAAGAGAAAGAATGttttcacaaatctaaatgttatTTTTCTACAAAATAACACTTAGACCAGTGGTTTTCCAACCTTTTTCAATCGGGCCCCCCCCCTTCTATAAATATTTTGGGGGCGGTAGGGCGCTCCACGCCGACAATCGCACACCCGACAGTTTAGGAACCACTGACTTGGACAactgtaaaaatatataatttgctTGTACTCAGTTTAAGTGGAAAGGTAATGCAACTGAAATCCTCCAACATAATGTAATTTTAATCTCAATAAAGTGCAAGAAGGGAAGTTAGACTGA
>XM_036984378.1
GCTGCATTAAAGGACAGAAATCTCAACAATTACACGGTGGAAgatatgttaaaaaaaaactTAACATGTGTCGTACAGAGTCGCAGTCTGTCTGAAGTACGAACACAATGAACACGTGGAGATGAGTAGTAATGAGTGTTTTGGATGCGGCCGCACCGGCCACTGGATCAAGAACTGTCCGAATGCCGGGCGGGGACGAGGCAAGGGCCGCGGGAGGGGGAAAGATCTGTTCTGCTATCGCTGTGGCGAGCCTGGGCATGTTGCCAGGGACTGTGAGAGGACTGAGGATGCGTGCTACAACTGTGGTCGTGGAGGACACATTTCCAGAGACTGTAAGGAGCCCAAGAAGGAGAGGGAACAGGTCTGTTACAACTGTGGCAAGGCTGGCCACGTGGCCCGAGACTGTGACCATGCCAACGAGCAGAAGTGCTACTCCTGTGGAGGTTTTGGACACATCCAGAAGGGCTGTGAGAAGGTCAAATGTTACAGGTGTGGTGAGATCGGCCATGTTGCCGTCCAGTGCAGCAAGGCCAGCGAAGTCAACTGCTACAATTGCGGAAAGTCTGGTCACCTGGCTAAAGAATGCACCATCGAGGCCACGGCCTAGCACTCTGCTGCCTTCCTACGCCCCTCCTTTTTCACATGGATGATTGTATTATTTTGTCTGAAACCTGCCCTCTGGCTACGGAGGTTTCTCCCAGACCAGTCTGCTGTAAAGTGCTGAATAATACACTTTCTGTATTTAATCCAAAATGTTTACTTTGGTAGAGGTTAATGTACAATGGTTTGTTAAAGAAGCCATTTTCCATGCCACTGGTGACAAGGGATGAGTTCTGAGTGGATGTCCTCCCCACCAGGTCCGGGGAAACCAGCCCTTCAAGTCAGAATGAAAGTTTGTCGGAactttttagttttttggaaCATAACGGACTAGACCTGAGACAGCAGCACCACCCAGTGGTCGTTATGGGTTCAGTCCGTCCGACAGCAGCATGCAGACAGACCAGGACCAAACCCGTCACAACATGGTGTATGAATACAGACGGTCATAGCTAATTCACAAGaaaatacaaatatttgtttTTGTACAGTTAGCTGCTGAGTGTCAGAATCAGTCTTGATCCAGTAGTAAGTTAATGTGTGTTATATAACCATGGAAACAGATCAGAAAAAGAAAGGCTAAGAGAAAGAATGttttcacaaatctaaatgttatTTTTCTACAAAATAACACTTAGACCAGTGGTTTTCCAACCTTTTTCAATCGGGCCCCCCCCCTTCTATAAATATTTTGGGGGCGGTAGGGCGCTCCACGCCGACAATCGCACACCCGACAGTTTAGGAACCACTGACTTGGACAactgtaaaaatatataatttgctTGTACTCAGTTTAAGTGGAAAGGTAATGCAACTGAAATCCTCCAACATAATGTAATTTTAATCTCAATAAAGTGCAAGAAGGGAAGTTAGACTGA
>XM_036984376.1
GAGTCGCAGTCTGTCTGAAGAACACGTGGAGATGAGTAGTAATGAGTGTTTTGGATGCGGCCGCACCGGCCACTGGATCAAGAACTGTCCGAATGCCGGGCGGGGACGAGGCAAGGGCCGCGGGAGGGGGAAAGATCTGTTCTGCTATCGCTGTGGCGAGCCTGGGCATGTTGCCAGGGACTGTGAGAGGACTGAGGATGCGTGCTACAACTGTGGTCGTGGAGGACACATTTCCAGAGACTGTAAGGAGCCCAAGAAGGAGAGGGAACAGGTCTGTTACAACTGTGGCAAGGCTGGCCACGTGGCCCGAGACTGTGACCATGCCAACGAGCAGAAGTGCTACTCCTGTGGAGGTTTTGGACACATCCAGAAGGGCTGTGAGAAGGTCAAATGTTACAGGTGTGGTGAGATCGGCCATGTTGCCGTCCAGTGCAGCAAGGCCAGCGAAGTCAACTGCTACAATTGCGGAAAGTCTGGTCACCTGGCTAAAGAATGCACCATCGAGGCCACGGCCTAGCACTCTGCTGCCTTCCTACGCCCCTCCTTTTTCACATGGATGATTGTATTATTTTGTCTGAAACCTGCCCTCTGGCTACGGAGGTTTCTCCCAGACCAGTCTGCTGTAAAGTGCTGAATAATACACTTTCTGTATTTAATCCAAAATGTTTACTTTGGTAGAGGTTAATGTACAATGGTTTGTTAAAGAAGCCATTTTCCATGCCACTGGTGACAAGGGATGAGTTCTGAGTGGATGTCCTCCCCACCAGGTCCGGGGAAACCAGCCCTTCAAGTCAGAATGAAAGTTTGTCGGAactttttagttttttggaaCATAACGGACTAGACCTGAGACAGCAGCACCACCCAGTGGTCGTTATGGGTTCAGTCCGTCCGACAGCAGCATGCAGACAGACCAGGACCAAACCCGTCACAACATGGTGTATGAATACAGACGGTCATAGCTAATTCACAAGaaaatacaaatatttgtttTTGTACAGTTAGCTGCTGAGTGTCAGAATCAGTCTTGATCCAGTAGTAAGTTAATGTGTGTTATATAACCATGGAAACAGATCAGAAAAAGAAAGGCTAAGAGAAAGAATGttttcacaaatctaaatgttatTTTTCTACAAAATAACACTTAGACCAGTGGTTTTCCAACCTTTTTCAATCGGGCCCCCCCCCTTCTATAAATATTTTGGGGGCGGTAGGGCGCTCCACGCCGACAATCGCACACCCGACAGTTTAGGAACCACTGACTTGGACAactgtaaaaatatataatttgctTGTACTCAGTTTAAGTGGAAAGGTAATGCAACTGAAATCCTCCAACATAATGTAATTTTAATCTCAATAAAGTGCAAGAAGGGAAGTTAGACTGA
>TU753599
gggacCGATAACAAACAAACAGGAACAGTCACTTAGCTGAGGAACACGTGGAGATGAGTAGTAATGAGTGTTTTGGATGCGGCCGCACCGGCCACTGGATCAAGAACTGTCCGAATGCCGGGCGGGGACGAGGCAAGGGCCGCGGGAGGGGGAAAGATCTGTTCTGCTATCGCTGTGGCGAGCCTGGGCATGTTGCCAGGGACTGTGAGAGGACTGAGGATGGTCTGTTACAACTGTGGCAAGGCTGGCCACGTGGCCCGAGACTGTGACCATGCCAACGAGCAGAAGTGCTACTCCTGTGGAGGTTTTGGACACATCCAGAAGGGCTGTGAGAAGGTCAAATGTTACAGGTGTGGTGAGATCGGCCATGTTGCCGTCCAGTGCAGCAAGGCCAGCGAAGTCAACTGCTACAATTGCGGAAAGTCTGGTCACCTGGCTAAAGAATGCACCATCGAGGCCACGGCCTAGCACTCTGCTGCCTTCCTACGCCCCTCCTTTTTCACATGGATGATTGTATTATTTTGTCTGAAACCTGCCCTCTGGCTACGGAGGTTTCTCCCAGACCAGTCTGCTGTAAAGTGCTGAATAATACACTTTCTGTATTTAATCCAAAATGTTTACTTTGGTAGAGGTTAATGTACAATGGTTTGTTAAAGAAGCCATTTTCCATGCCACTGGTGACAAGGGATGAGTTCTGAGTGGATGTCCTCCCCACCAGGTCCGGGGAAACCAGCCCTTCAAGTCAGAATGAAAGTTTGTCGGAactttttagttttttggaaCATAACGGACTAGACCTGAGACAGCAGCACCACCCAGTGGTCGTTATGGGTTCAGTCCGTCCGACAGCAGCATGCAGACAGACCAGGACCAAACCCGTCACAACATGGTGTATGAATACAGACGGTCATAGCTAATTCACAAGaaaatacaaatatttgtttTTGTACAGTTAGCTGCTGAGTGTCAGAATCAGTCTTGATCCAGTAGTAAGTTAATGTGTGTTATATAACCATGGAAACAGATCAGAAAAAGAAAGGCTAAGAGAAAGAATGttttcacaaatctaaatgttatTTTTCTACAAAATAACACTTAGACCAGTGGTTTTCCAACCTTTTTCAATCGGGCCCCCCCCCTTCTATAAATATTTTGGGGGCGGTAGGGCGCTCCACGCCGACAATCGCACACCCGACAGTTTAGGAACCACTGACTTGGACAactgtaaaaatatataatttgctTGTACTCAGTTTAAGTGGAAAGGTAATGCAACTGAAATCCTCCAACATAATGTAATTTTAATCTCAATAAAGTGCAAGAAGGGAAGTT

Function

symbol description
cnbp Enables G-quadruplex DNA binding activity. Involved in G-quadruplex DNA formation and negative regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; endoplasmic reticulum; and nucleus. Predicted to be active in cytoplasm. Implicated in myotonic dystrophy type 2.

NR:

description
hypothetical protein cypCar_00036392

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984377.1 False 1488 mRNA 0.48 6 90518807 90562974
XM_036984378.1 False 1478 mRNA 0.47 6 90518933 90562974
XM_036984376.1 False 1388 mRNA 0.47 6 90519010 90562974
TU753599 True 1332 TUCP 0.47 5 90518885 90562967

Neighbor

gene id symbol gene type direction distance location
LOC110528705 mkrn2 coding upstream 11938 90484022 ~ 90506869 (+)
tsen2 tsen2 coding upstream 60201 90413719 ~ 90459450 (+)
pparg LOC106583866 coding upstream 109772 90290101 ~ 90409035 (+)
iqsec1b iqsec1 coding upstream 356159 90096022 ~ 90162648 (+)
LOC110529066 LOC106583848 coding upstream 1026368 89479837 ~ 89492439 (+)
zgc:77375 LOC106593459 coding downstream 34039 90597013 ~ 90627553 (+)
cfap92 LOC106583852 coding downstream 177690 90740664 ~ 90885403 (+)
G662232 NA non-coding upstream 13816 90504528 ~ 90504991 (+)
G662202 NA non-coding upstream 18075 90447802 ~ 90500732 (+)
G662215 NA non-coding upstream 64116 90454065 ~ 90454691 (+)
G662214 NA non-coding upstream 66120 90452065 ~ 90452687 (+)
G662249 NA non-coding downstream 10355 90573329 ~ 90645431 (+)
G662252 NA non-coding downstream 14251 90577225 ~ 90579929 (+)
G662279 NA non-coding downstream 85520 90648494 ~ 90648708 (+)
G662757 NA non-coding downstream 87468 90650442 ~ 90650668 (+)
G662762 NA non-coding downstream 91503 90654477 ~ 90654780 (+)
G662026 NA other upstream 518896 89999277 ~ 89999911 (+)
G661692 NA other upstream 1047416 89467984 ~ 89471391 (+)
G661696 NA other upstream 1048688 89469829 ~ 89470119 (+)
G661541 NA other upstream 1262383 89255760 ~ 89256424 (+)
G661491 NA other upstream 1336770 89180814 ~ 89182037 (+)

Expression


Co-expression Network