G566317


Basic Information

Item Value
gene id G566317
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 143874 ~ 146247 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU644589
cacgtctgttgactcatccagctgtaacagacatataccaggagctgtgccaggcccgccacgtctgttgactcatctagctgtaacgcatagaattatTGGCTTGTAaggcgaagcagtaattgttccAAAcatctgccatgtcactgatgcgttgtgaaaactgtatagttttttgggatTTTTCCCCCCAGCCATATCTGCGGAAGCAGGAAGatttaagtcctccacaatagtatggtgcttgcctgtcctagccactcgatagctcaccatataagacgatTCTAGcgccttcttattaatggtatctgttgcttttatacatgtcttactactcgaaagtagtCTCAACTCTCGCtgaaaaaactcctgtggcttatttttcaaattggcatgttttgtttctaaatgtctgtgcaagagtgaaggtttcatcgagttgtgagatataaacacactgtggctgaggaaaggcacatccctgtctgttgtttggtGTTTTGCCGGATAAGGAGGCAGTAGCTCTGACAGTTGTGATTCTGATGCAGcccagtgtccatgctagctgggttAACAGCAAATggagaattactgatgctagcattggatgtgcttatggaagcagaacaacttgtgtcgttgaCAGGTGCAGTACTGCTGGTACCAGTAGAGCTGGGATTTGTCTATGGAcggaagcaaaaaaaaaaaaaaacagcaaaaaaCTGACAAGATGCACACTGATCAGTAAAGAGAGACTAACATTCTATGATGCTCCCTTTCCTCTGCATTGTTCTCTCGCAGTGAGAAACAATATGATTACAATAGTGTTCTACACTTTCTTCATTTGATCCAATTCAACGTTGCCATTTATTTTATGAGATGAGAATTAAGAGGAGTGACTAATCTTAGCTGGTCTGAGAGAACTGATGAGGCTTCTCTCCTTCATGTATACATTGGTGTCTTTTTAAATGGCCCAATCTGTAGAATCTCTTCTCACAGTCAGTGCTTTGATAAGGCTTCGGTCAACTATGTATCCGTTGGTGTGTCTTTACATTGCCCAAATCGGGAGAAGCTGTTGCCACAGTAAGAGCagaagaaaggcttctctcctgtgtgtgatCTCTGATGACCGTTTAGCTCAGCTGATgatttaaatcattttccacagtcagagcaagaGTAAGGCTACTCTCCATGATGTATACCTTGGTGTCTTTTTAACTGGcccatttgagagaaactcttcttacagtcagagcagaagtaaggcttttctccagtgtgtgttctctggtgaacttttAGAACATTTAAATAcgtgaagcattttccacagtcagagcaagagtaaggcttttctccagtgtgtgttctctggtgaacttttAGATCATGTAAATAcgtgaagcattttccacagtcagagcaagagtaaggcttttctccagtgtgtgttctctggtggaCTTTTAGAACATTTAAATAcgtgaagcattttccacagtcagagcaagagtaaggcttctctcctgtgtgtgttctctggtgaacttttAGAACATTTAAATAcgtgaagcattttccacagtcagagcaagagtaaggcttctctcctgtgtgtgttcgttcATGTTGTTTTAGGTGGCTCGATTGAGAGAAATTCTTTCCAcaatcagagcaggagtaaggcttttctccagtgtgtgttctctggtgaacttttAGAACATTTAAATAcgtgaagcattttccacagtcagagcaagagtaaggcttctctcctgtgtgtgttctctggtgaccGTTTAGCTCAGGTGATGTTctgaagcattttccacagtctgagcaggagtaaggcttctctcctgtgtgtatacgttcatgttGTTTTAGGTGGCTCAgttgagagaaactctttccacagtccgAGCAggagaaaggcttctctcctgtgtgtatacgttcatgttGTTTTAGGTGGCTCAgttgagagaaactctttccacagtccgAGCAggagaaaggcttctctcctgtgtgtatacgttcatgttGTTTTAGAAATTTTGAGtgagagaaactctttccacagtcagagcaggagtaaggcttctctcctgtgtgtgttctctgatgaacttttagctgAGCTGATGttgtgaatctcttcccacagtcagtgcAGGAATACagattctctcctgtgtgtatttttagGTGTATTTTTAGCTTTGATAGAACTGGGAAAATCTCCTCACAATGTGGGCAGTGGTGAGACCTCTTAGCTCTGTGATCTTCCTGCTGTTGCTCTCTGGATGTAGAGAATGTCTC

Function

NR:

description
PREDICTED: oocyte zinc finger protein XlCOF6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU644589 True 2334 lncRNA 0.43 2 143874 146247

Neighbor

gene id symbol gene type direction distance location
LOC118965194 LOC106574951 coding downstream 14614 115364 ~ 129260 (-)
LOC118965196 NA coding downstream 65127 74758 ~ 78747 (-)
LOC110495590 LOC106574982 coding downstream 74774 61099 ~ 69100 (-)
LOC110497043 LOC106592258 coding downstream 115194 20836 ~ 28680 (-)
LOC110511225 LOC106574981 coding upstream 4542 150789 ~ 167325 (-)
LOC110510711 LOC106575981 coding upstream 41997 188244 ~ 208591 (-)
LOC110519534 LOC106575793 coding upstream 96310 242557 ~ 279418 (-)
LOC110517686 LOC106592870 coding upstream 114202 260449 ~ 297608 (-)
LOC110517689 LOC106598090 coding upstream 152028 298275 ~ 321254 (-)
G566364 NA non-coding downstream 18306 124851 ~ 125568 (-)
G566326 NA non-coding downstream 43808 99444 ~ 100066 (-)
G566357 NA non-coding downstream 58951 82098 ~ 84923 (-)
G566344 NA non-coding downstream 107490 35991 ~ 36384 (-)
G566369 NA non-coding upstream 1729 147976 ~ 148691 (-)
G566347 NA non-coding upstream 13796 160043 ~ 162135 (-)
G566385 NA non-coding upstream 55251 201498 ~ 202085 (-)
G566400 NA non-coding upstream 102590 248837 ~ 266014 (-)
G566403 NA non-coding upstream 115674 261921 ~ 262596 (-)
LOC118965198 LOC106595074 other upstream 327637 473884 ~ 477537 (-)
LOC110519328 LOC106574843 other upstream 388772 527767 ~ 541749 (-)
LOC110487686 bora other upstream 554236 700093 ~ 708877 (-)
LOC110528715 LOC106594730 other upstream 685287 831066 ~ 842688 (-)

Expression


Co-expression Network