G566283


Basic Information

Item Value
gene id G566283
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 409308 ~ 410632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU644542
gacattttattttattacaagCAAATGTTAGGATACACGATATACCAGACTCACACATGATATACCAGACTCACACATGATATACCAGACTCACACATGATATACCAGACTCACACATGATATACCAGACTCACACATGATATACCAGACTCCTAGATGACATACCAGAGTCATGGGCTCCACATTCTGATACACAGCTAGAATTCTCATTCTTACACAGAAGTGAGGAATATTCTCTGCTTAAGGCAGTTGTAGTAAGTCTGGATCACATGCCATTGGACAACCACATGCATATTATCTGACACCCTTACAGTATATAATGCAGTATAAAATATACACTGAGCTTACCAACCATTAGTACTAGTACCGAGCTAAAAAAAATCCTTCCTTTAAATCTGTCATCTACTGATTGaagagacatcaataagggatcatagctttcacctgatcagTCAATGCCATGGAAATATGTAGTATCCTCAGTGTATATTCATACCCAAGGCACAAGACAAAAGCTATTTTAAGAGTACTACAAGCACCTTCTCATCTCTTTAAGACCGTGTGCAAGTATTTCGTTAGACGTCATTAACCCTTTAGAATGCTGATCACTTGGTCCGCTCGCGGCCAAACTACATCAGATCAGttatatgtattatttcttaaCAATGTCTAAATGCATTTCACCCATCGTTTTCCCCCCCTCCATGATTTCATAGGTCATTGTCAGGCAGAATGAGGTTCTATATTGTTTGAATAAGACTCTGGACATCTGAAAAACAGCTCCACATGCAAAAGCCACGTGCACAAAAATAATCAATTAAAAAGTGAGAAAAGATTAAACACGTTATACTGAGTACCGGAGGACGTCAAATACTAAAATACTGGAACAGACAGGATTTTGAGTCTAAATCTGACACGTTTATACAATTCCTTTGACTAATTTGGGCACTTGTTAAGGTTAATACAGGGTTCAGCGTTGCTAACCTGCAAACCTCCAGTAACTTTCTTAAAATCCCAGGTTTCTAGAAACCTCCGAAATGGAAGATCCCCAGAATCAATAGGGAATAAGCAGGACATCCGGGAAAGTCAGGGAATTGTCCAGAGTTTCTGGGACTTTGGGAAAGCTACTGGACATGTAGTCGAGTGTCGCCCCCTTGGGACTCGGAGGTCTACTTGCGTCCGACAGTCTCAGCCAGTTTCTTCAGTCTCTTCTTCAGTTCCAGAGGAAACTTCTCATAACATTTCTTACACACAGGCTTCATGTCAA
>TU644544
gacattttattttattacaagCAAATGTTAGGATACACGATATACCAGACTCACACATGATATACCAGACTCACACATGATATACCAGACTCACACATGATATACCAGACTCACACATGATATACCAGACTCACACATGATATACCAGACTCCTAGATGACATACCAGAGTCATGGGCTCCACATTCTGATACACAGCTAGAATTCTCATTCTTACACAGAAGTGAGGAATATTCTCTGCTTAAGGCAGTTGTAGTAAGTCTGGATCACATGCCATTGGACAACCACATGCATATTATCTGACACCCTTACAGTATATAATGCAGTATAAAATATACACTGAGCTTACCAACCATTAGTACTAGTACCGAGCTAAAAAAAATCCTTCCTTTAAATCTGTCATCTACTGATTGaagagacatcaataagggatcatagctttcacctgatcagTCAATGCCATGGAAATATGTAGTATCCTCAGTGTATATTCATACCCAAGGCACAAGACAAAAGCTATTTTAAGAGTACTACAAGCACCTTCTCATCTCTTTAAGACCGTGTGCAAGTATTTCGTTAGATCAGttatatgtattatttcttaaCAATGTCTAAATGCATTTCACCCATCGTTTTCCCCCCCTCCATGATTTCATAGGTCATTGTCAGGCAGAATGAGGTTCTATATTGTTTGAATAAGACTCTGGACATCTGAAAAACAGCTCCACATGCAAAAGCCACGTGCACAAAAATAATCAATTAAAAAGTGAGAAAAGATTAAACACGTTATACTGAGTACCGGAGGACGTCAAATACTAAAATACTGGAACAGACAGGATTTTGAGTCTAAATCTGACACGTTTATACAATTCCTTTGACTAATTTGGGCACTTGTTAAGGTTAATACAGGGTTCAGCGTTGCTAACCTGCAAACCTCCAGTAACTTTCTTAAAATCCCAGGTTTCTAGAAACCTCCGAAATGGAAGATCCCCAGAATCAATAGGGAATAAGCAGGACATCCGGGAAAGTCAGGGAATTGTCCAGAGTTTCTGGGACTTTGGGAAAGCTACTGGACATGTAGTCGAGTGTCGCCCCCTTGGGACTCGGAGGTCTACTTGCGTCCGACAGTCTCAGCCAGTTTCTTCAGTCTCTTCTTCAGTTCCAGAGGAAACTTCTCATAACATTTCTTACACACAGGCTTCATGTCAA
>TU644545
gacattttattttattacaagCAAATGTTAGGATACACGATATACCAGACTCACACATGATATACCAGACTCACACATGATATACCAGACTCACACATGATATACCAGACTCACACATGATATACCAGACTCACACATGATATACCAGACTCCTAGATGACATACCAGAGTCATGGGCTCCACATTCTGATACACAGCTAGAATTCTCATTCTTACACAGAAGTGAGGAATATTCTCTGCTTAAGGCAGTTGTAGTAAGTCTGGATCACATGCCATTGGACAACCACATGCATATTATCTGACACCCTTACAGTATATAATGCAGTATAAAATATACACTGAGCTTACCAACCATTAGTACTAGTACCGAGCTAAAAAAAATCCTTCCTTTAAATCTGTCATCTACTGATTGaagagacatcaataagggatcatagctttcacctgatcagTCAATGCCATGGAAATATGTAGTATCCTCAGTGTATATTCATACCCAAGGCACAAGACAAAAGCTATTTTAAGAGTACTACAAGCACCTTCTCATCTCTTTAAGACCGTGTGCAAGTATTTCGTTAGATCAGttatatgtattatttcttaaCAATGTCTAAATGCATTTCACCCATCGTTTTCCCCCCCTCCATGATTTCATAGGTCATTGTCAGGCAGAATGAGGTTCTACATCGTTTTTCCCCCCTCCCTGCTTTCATAGGTCATTGTCAGGCAGAATGAGGTTCTATATTGTTTGAATAAGACTCTGGACATCTGAAAAACAGCTCCACATGCAAAAGCCACGTGCACAAAAATAATCAATTAAAAAGTGAGAAAAGATTAAACACGTTATACTGAGTACCGGAGGACGTCAAATACTAAAATACTGGAACAGACAGGATTTTGAGTCTAAATCTGACACGTTTATACAATTCCTTTGACTAATTTGGGCACTTGTTAAGGTTAATACAGGGTTCAGCGTTGCTAACCTGCAAACCTCCAGTAACTTTCTTAAAATCCCAGGTTTCTAGAAACCTCCGAAATGGAAGATCCCCAGAATCAATAGGGAATAAGCAGGACATCCGGGAAAGTCAGGGAATTGTCCAGAGTTTCTGGGACTTTGGGAAAGCTACTGGACATGTAGTCGAGTGTCGCCCCCTTGGGACTCGGAGGTCTACTTGCGTCCGACAGTCTCAGCCAGTTTCTTCAGTCTCTTCTTCAGTTCCAGAGGAAACTTCTCATAACATTTCTTACACACAGGCTTCATGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU644542 False 1267 lncRNA 0.40 2 409308 410632
TU644544 False 1208 lncRNA 0.40 3 409308 410632
TU644545 True 1266 lncRNA 0.40 2 409308 410632
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Neighbor

gene id symbol gene type direction distance location
LOC110519529 LOC106592060 coding upstream 168151 175279 ~ 241157 (+)
LOC118965192 NA coding upstream 263473 29901 ~ 145835 (+)
LOC118965197 NA coding upstream 302615 104976 ~ 107116 (+)
LOC118965195 LOC106575958 coding upstream 326798 80384 ~ 82510 (+)
LOC110495589 LOC106575981 coding upstream 400231 4368 ~ 9077 (+)
LOC110495368 gas6 coding downstream 26437 437069 ~ 465238 (+)
LOC118936670 atp4b coding downstream 112094 522726 ~ 528216 (+)
LOC118965199 dcun1d2 coding downstream 154176 564808 ~ 574731 (+)
LOC110515852 adprhl1 coding downstream 169207 579839 ~ 596408 (+)
LOC110510541 LOC106575911 coding downstream 186009 596641 ~ 610641 (+)
G566286 NA non-coding upstream 839 407662 ~ 408469 (+)
G566282 NA non-coding upstream 2000 406816 ~ 407308 (+)
G566267 NA non-coding upstream 3822 381241 ~ 405486 (+)
G566214 LOC106575882 non-coding upstream 37061 298484 ~ 372247 (+)
G566470 NA non-coding downstream 49233 459865 ~ 461246 (+)
G566471 NA non-coding downstream 50002 460634 ~ 461082 (+)
G566472 NA non-coding downstream 56406 467038 ~ 467934 (+)
G566473 NA non-coding downstream 58010 468642 ~ 468959 (+)
G566474 NA non-coding downstream 59129 469761 ~ 470057 (+)
LOC110495358 LOC106575795 other downstream 488580 897860 ~ 901091 (+)
LOC110495360 LOC106594657 other downstream 491460 902092 ~ 952571 (+)
LOC110496962 vps8 other downstream 594018 982188 ~ 1101045 (+)
G566970 NA other downstream 957965 1368597 ~ 1370243 (+)
phka2 LOC106574897 other downstream 974365 1384741 ~ 1420576 (+)

Expression

G566283 Expression in all Baseline Samples

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G566283 Expression in each Bioproject

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G566283 Expression in each Sample
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Co-expression Network