G566740


Basic Information

Item Value
gene id G566740
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 790337 ~ 792792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU645126
ATGATCAGGGTTAGAGACACACTGGAAATTGGGCTTAATGTCGAAGACCGGGGTCACAACAGTCTTCCACATTAagtgtctttaaagcagttctttaaagcagttctattcatgtctttaaagcagttctatccgtgtctttaaagcagttctatccgtttctttaaagcagttctatctgtgtctttaaagcagttctatccgtgtctttacagcagttctatccgtgtctttaaagcagttctatccgtgtctttaaagcagttctatccgtgtctttacagcagttctatccgtgtctttaaagcagttctatccgtgtctttaaagcagttctttacagcagttctatccgtgtctttaaagcagttctttacagcagttctatccgtgtctttaaagcagttctttaaagcagttctatccgtgtctttacagcagttctatccgtgtctttaaagcagttctatccgtgtctttaaagcagttctatccgtgtctttaaagcagttctatccatgtctttaaagcagttctatccgtgtctttaaagcagttctatccgtgtctttacagcagttctatccgtgtctttacagcagttctatccgtgtctttaaagcagttctatccgtgtctttaaagcagttctatccgtgtctttaaagcagttctatccgtgtctttacagcagttctatccgtcTGTCTGTGAGGGTAATGGAGCGTCTAGATGTGTCCTGGTGTTTCCTGGTTTTTGGAAGGTCAAACCAAGTTGAACTCTGTCCCTGTTTGTAGTTTCCCTCCCACAGTCGTGTCCCACATAGAAAACTCACGATGATGATTAACTGAAGACAACAAATTCCTTCTGCTGCTTTCACATATTCAGGAAATAATGTGGGACCCCTGTTTTCCCAACAAGGATTTTGTATCAGATCTCTTTTGTTCTGGCAGGTCTTTATGtctcactctctttgtctctttcacATTTCACCtcttcatcagtctctccctgtctctctctcctcctcc

Function

NR:

description
activated CDC42 kinase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU645126 True 1031 lncRNA 0.41 3 790337 792792

Neighbor

gene id symbol gene type direction distance location
LOC110487686 bora coding downstream 81460 700093 ~ 708877 (-)
LOC110527172 LOC106575921 coding downstream 108910 677077 ~ 681427 (-)
LOC118965201 LOC106583510 coding downstream 117146 669059 ~ 673191 (-)
LOC110527163 LOC106575909 coding downstream 139746 629957 ~ 650591 (-)
LOC110527165 lamp1 coding downstream 164901 610738 ~ 625436 (-)
LOC110528715 LOC106594730 coding upstream 38274 831066 ~ 842688 (-)
LOC110495363 LOC106574929 coding upstream 99000 891792 ~ 896858 (-)
LOC110517159 LOC106596293 coding upstream 170662 963454 ~ 976670 (-)
LOC118936672 LOC106596203 coding upstream 329034 1121826 ~ 1148001 (-)
LOC110495354 LOC106593697 coding upstream 430621 1223413 ~ 1247319 (-)
G566731 NA non-coding downstream 41073 747928 ~ 749264 (-)
G566725 NA non-coding downstream 48475 740040 ~ 741862 (-)
LOC118936671 LOC106574830 non-coding downstream 57590 725007 ~ 818367 (-)
G566722 NA non-coding downstream 59566 728161 ~ 730771 (-)
G566718 NA non-coding downstream 68837 721069 ~ 721500 (-)
G566742 NA non-coding upstream 18703 811495 ~ 874295 (-)
G566750 NA non-coding upstream 60617 853409 ~ 856963 (-)
G566759 NA non-coding upstream 85534 878326 ~ 878718 (-)
G566781 NA non-coding upstream 154896 947688 ~ 947889 (-)
G566783 NA non-coding upstream 159045 951837 ~ 954510 (-)
LOC110519328 LOC106574843 other downstream 248631 527767 ~ 541749 (-)
LOC118965198 LOC106595074 other downstream 315859 473884 ~ 477537 (-)
LOC110519534 LOC106575793 other downstream 539144 242557 ~ 279418 (-)
G567147 NA other upstream 411083 1203875 ~ 1207277 (-)
LOC118965204 LOC106592365 other upstream 454865 1247650 ~ 1284997 (-)
G567242 NA other upstream 686560 1479352 ~ 1480049 (-)
G567318 LOC106592056 other upstream 778567 1571359 ~ 1571804 (-)

Expression


Co-expression Network