G566742


Basic Information

Item Value
gene id G566742
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 811495 ~ 874295 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU645135
ACAggaacattgttttattttaaatggacCATTTCTTATTTTTCAGATCATAATTACATCATTTCAACccagtgaaggagagaaggaacccagATGCTCGGTCAGACTAATGAAACTAGTATCATTTATGAAGAGAGTATATTTACACTGAAAGGATATAAGAATCAGAGCCCCACATAACTGATGGAcgatgtcccaaatggcaccctattccctatgtggtgcactacattagacccgAGCCCTTGATCAAGGGTAGTGCAcgacatagagaatagggtgccatttggaacatagaAGTCGATGATGCCTTTCACAAAATCCCAAACGGTTGGTTTTTGAAAATAAAATGAACTACTGATGAGGCACGTGTCTGaggcaaaaataaaataaagacaaaaaATAATGTAATTGGAATATAAAGTTAAATAACAGACCAGTTGGTTAATACTCAAGCAtttataatacaaaataaaacaaaccCCAGAGAAAATGTGttcatcccaaattgcaccctattccctacatagtgcagacTACTTTTGTAGTGCAGACTAGAGTGGCATTTGGGACTCTCTTCCGACTACACTACCAGCCCAGAACATGGGTTAGAGGAGGAATTCCATCTCACATTATAAAGCTTATTACGACCCCAAATCATTCATCAGCATTAGAAAAAaaacaatagttatttacaatcATATTGTCCAACACTATTAATAGTTTGAATGACAACGTAAAATCACCTTAGTGCGCCAACGTGGGGACAGAAACTAACTGTAACCGGGGGGGGggggggggggggg
>TU645130
ACAggaacattgttttattttaaatggacCATTTCTTATTTTTCAGATCATAATTACATCATTTCAACccagtgaaggagagaaggaacccagtgaaggagagaaggaaccCAGATGCTCGGTCAGACTAATGAAACTAGTATCATTTATGAAGAGAGTATATTTACACTGAAAGGATATAAGAATCAGAGCCCCACATAACTGATGGAcgatgtcccaaatggcaccctattccctatgtggtgcactacattagacccgAGCCCTTGATCAAGGGTAGTGCAcgacatagagaatagggtgccatttggaacatagaAGTCGATGATGCCTTTCACAAAATCCCAAACGGTTGGTTTTTGAAAATAAAATGAACTACTGATGAGGCACGTGTCTGaggcaaaaataaaataaagacaaaaaATAATGTAATTGGAATATAAAGTTAAATAACAGACCAGTTGGTTAATACTCAAGCAtttataatacaaaataaaacaaaccCCAGAGAAAATGTGttcatcccaaattgcaccctattccctacatagtgcagacTACTTTTGTAGTGCAGACTAGAGTGGCATTTGGGACTCTCTTCCGACTACACTACCAGCCCAGAACATGGGTTAGAGGAGGAATTCCATCTCACATTATAAAGCTTATTACGACCCCAAATCATTCATCAGCATTAGAAAAAaaacaatagttatttacaatcATATTGTCCAACACTATTAATAGTTTGAATGACAACGTAAAATCACCTTAGTGCGCCAACGTGGGGACAGAAACTAACTGTAACCGGGGGGGGGTGTTAATAGTCACGACCTTCTAGATTTCCTGTTTCCATTTGTCAGAGGTGAATAAAGGATGTTTCATTGATGTGCAGTAGGTTCTGGACCTCCAACAGGTATTTCCTGCTCTCCAGACTACATTATGTATagatgtgtgtgtacacacacacacacacacgggaagaCTCTGTTGTCTTGCTGCTCTGACAAAAATGCGTCTTCCACACAGTAGAcaagggttgtgttccaaacggCTCCCTATTTAGACCAGTGGGCCCTGGTCACCGTACGCAGTCAGGGTGTAACGTAACAATAGTGTCCCTCCAGCCCAGGGAGGGTGAGGGGGGcggggtgagg
>TU645131
ACAggaacattgttttattttaaatggacCATTTCTTATTTTTCAGATCATAATTACATCATTTCAACccagtgaaggagagaaggaacccagtgaaggagagaaggaaccCAGATGCTCGGTCAGACTAATGAAACTAGTATCATTTATGAAGAGAGTATATTTACACTGAAAGGATATAAGAATCAGAGCCCCACATAACTGATGGAcgatgtcccaaatggcaccctattccctatgtggtgcactacattagacccgAGCCCTTGATCAAGGGTAGTGCAcgacatagagaatagggtgccatttggaacatagaAGTCGATGATGCCTTTCACAAAATCCCAAACGGTTGGTTTTTGAAAATAAAATGAACTACTGATGAGGCACGTGTCTGaggcaaaaataaaataaagacaaaaaATAATGTAATTGGAATATAAAGTTAAATAACAGACCAGTTGGTTAATACTCAAGCAtttataatacaaaataaaacaaaccCCAGAGAAAATGTGttcatcccaaattgcaccctattccctacatagtgcagacTACTTTTGTAGTGCAGACTAGAGTGGCATTTGGGACTCTCTTCCGACTACACTACCAGCCCAGAACATGGGTTAGAGGAGGAATTCCATCTCACATTATAAAGCTTATTACGACCCCAAATCATTCATCAGCATTAGAAAAAaaacaatagttatttacaatcATATTGTCCAACACTATTAATAGTTTGAATGACAACGTAAAATCACCTTAGTGCGCCAACGTGGGGACAGAAACTAACTGTAACCGGGGGGGGGTGTTAATAGTCACGACCTTCTAGATTTCCTGTTTCCATTTGTCAGAGGTGAATAAAGGATGTTTCATTGATGTGCAGTAGGTTCTGGACCTCCAACAGGTATTTCCTGCTCTCCAGACTACATTATGTATagatgtgtgtgtacacacacacacacacacacacacgggaagaCTCTGTTGTCTTGCTGCTCTGACAAAAATGCGTCTTCCACACAGTAGAcaagggttgtgttccaaacggCTCCCTATTTAGACCAGTGGGCCCTGGTCACCGTACGCAGTCAGGGTGTAACGTAACAATAGTGTCCCTCCAGCCCAGGGAGGGTGAGGGGGGcggggtgagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU645135 False 806 lncRNA 0.39 3 811495 874295
TU645130 False 1154 lncRNA 0.42 2 873116 874295
TU645131 True 1160 lncRNA 0.42 2 873116 874295

Neighbor

gene id symbol gene type direction distance location
LOC110487686 bora coding downstream 102618 700093 ~ 708877 (-)
LOC110527172 LOC106575921 coding downstream 130068 677077 ~ 681427 (-)
LOC118965201 LOC106583510 coding downstream 138304 669059 ~ 673191 (-)
LOC110527163 LOC106575909 coding downstream 160904 629957 ~ 650591 (-)
LOC110527165 lamp1 coding downstream 186059 610738 ~ 625436 (-)
LOC110495363 LOC106574929 coding upstream 17497 891792 ~ 896858 (-)
LOC110517159 LOC106596293 coding upstream 89159 963454 ~ 976670 (-)
LOC118936672 LOC106596203 coding upstream 247531 1121826 ~ 1148001 (-)
LOC110495354 LOC106593697 coding upstream 349118 1223413 ~ 1247319 (-)
LOC118965204 LOC106592365 coding upstream 373355 1247650 ~ 1284997 (-)
G566740 NA non-coding downstream 18703 790337 ~ 792792 (-)
G566731 NA non-coding downstream 62231 747928 ~ 749264 (-)
G566725 NA non-coding downstream 69633 740040 ~ 741862 (-)
LOC118936671 LOC106574830 non-coding downstream 78748 725007 ~ 818367 (-)
G566722 NA non-coding downstream 80724 728161 ~ 730771 (-)
G566759 NA non-coding upstream 4031 878326 ~ 878718 (-)
G566781 NA non-coding upstream 73393 947688 ~ 947889 (-)
G566783 NA non-coding upstream 77542 951837 ~ 954510 (-)
G566785 NA non-coding upstream 81237 955532 ~ 956045 (-)
G566789 NA non-coding upstream 87051 961346 ~ 962495 (-)
LOC110519328 LOC106574843 other downstream 269789 527767 ~ 541749 (-)
LOC118965198 LOC106595074 other downstream 337017 473884 ~ 477537 (-)
LOC110519534 LOC106575793 other downstream 560302 242557 ~ 279418 (-)
G567147 NA other upstream 329580 1203875 ~ 1207277 (-)
G567242 NA other upstream 605057 1479352 ~ 1480049 (-)
G567318 LOC106592056 other upstream 697064 1571359 ~ 1571804 (-)
LOC110527180 LOC106575808 other upstream 738573 1611276 ~ 1636199 (-)

Expression


Co-expression Network