G566750


Basic Information

Item Value
gene id G566750
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 853409 ~ 856963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU645151
CTTACAGTCCGGTACTTCATTCTCTTTCCCAGTTTGTCCTGGTTCACAAAAACTAACAGGGGCCAGACCCGGTAGATAGAAACTTGTAGCGCTGTGTAGCAGAAGGAAGATCACCAAAACAGAGCCTCTCGCTCTGTGCAGGGAGCACATTTTCCTCTTCTCTCGACGAACCTAGTTAGCTAAACGTTTCTTGGCGTAACGTTAATATCTGTCTACACAGGGGGTGACAGGCTAGCTGGCATTTGAATTCACCAGATAGGACAGTTGACATaaggtagctaacgttaactagctgggATATGTCTGCCTCCGTAGCTACATAACCCAGAGACTTTTCCTGCAGCGGGCAGACACGTCATCTGCGTCTACACGGACGTGTTCTTCCGTGGAGGATGATGGGACTCTGGAGattcacaattgagagcatcctgtcgggctgtgtcaactagtatggcaactgcaccgcccgcaaccccAGGGCTTTCCAGAGTGtgatgcggtctgcccaacgcatcaccggtgtCAAACTACCTGCCtctacctacagcacctgatgttaCAGATCacaaaggacaacaaccacccgagccactgcctgttcaccccgctatcatccaaaaggcgaggtcagtacaggtgcatcaaagctgggacagagtaATTGAAAAacatctatctcaaggccatcactgttaaatagccatcactagctagCTTCCACCCAGTTACTGAACCCTGCTCCTTAAGAGGCTGCTGCCCTTattacatagacttggaatcactggtcactttaataatgtttacatactgttttacccatctcatatgtacagtgggctccaaaattactggcacccctgactggcaatg
>TU645150
AGGGGTGTGGCTGCGGCTCTGGGGGAAGGTTCTGTCCTCTGTGTCTCAGCGATGGGAAAAATCTGTTCCAGTTCATTAGGCCATTCTGGGAAGGACCGAGAGGGACAATCatgaaaccacccaaaagacatccagccaacttgacacaactgtggaaagcattggagtcaacatggtccagcatccctgtggaaacgCTCCTGACACCTTGAAGAGGGCACAGCACCAACAAATAACTTAGCTGGCAACATGGCTATTGTGTCAGTAACCACAGCCATCATTAACCATAGACTACAAATACAAAGCCTTGGATACAGGTTAAAGGTGACAGGAAAAAAGGTCTCCCTGTTTTTCCAAACCTTTATAGAAAAGCTAAACACATCAAAGTGATCTGCAATAATATTTTGGTCAGAGTAGATTTTGTACCTTTGATCTAACACTAAAAGAGGCATGGCTACCTGTCAACATGCTCTTTTGGaatgctgaagaaatttgtcttggcacctaaaaccctcacaaacttttacagattcacaattgagagcatcctgtcgggctgtgtcaactagtatggcaactgcaccgcccgcaaccccAGGGCTTTCCAGAGTGtgatgcggtctgcccaacgcatcaccggtgtCAAACTACCTGCCtctacctacagcacctgatgttaCAGATCacaaaggacaacaaccacccgagccactgcctgttcaccccgctatcatccaaaaggcgaggtcagtacaggtgcatcaaagctgggacagagtaATTGAAAAacatctatctcaaggccatcactgttaaatagccatcactagctagCTTCCACCCA
>TU645148
CTTACAGTCCGGTACTTCATTCTCTTTCCCAGTTTGTCCTGGTTCACAAAAACTAACAGGGGCCAGACCCGGTAGATAGAAACTTGTAGCGCTGTGTAGCAGAAGGAAGATCACCAAAACAGAGCCTCTCGCTCTGTGCAGGGAGCACATTTTCCTCTTCTCTCGACGAACCTAGTTAGCTAAACGTTTCTTGGCGTAACGTTAATATCTGTCTACACAGGGGGTGACAGGCTAGCTGGCATTTGAATTCACCAGATAGGACAGTTGACATaaggtagctaacgttaactagctgggATATGTCTGCCTCCGTAGCTACATAACCCAGAGACTTTTCCTGCAGCGGGCAGACACGTCATCTGCGTCTACACGGACGTGTTCTTCCGTGGAGGATGATGGGACTCTGGAGGTAAAGTTGCCTGGGCTGTTGTTGAAAGAATAGCACTTTGTGTTAAAGAAAAGACATTTTccgacaaaaaaaatgtattattaaaaACGGGTTTATTGTCATGATTTCTAATTCCGCTGAGAATCAAACAGCAACATTCAGAGCACCTTACAATTTCGTCTCTGGCAGAAAGTGCCTATTCCAACAACGACCTGGAGATGGCAGTGTAAAACTAATATTTCTCTCAAAACGGGAACTATTATTCGCCATGTTTGTCACAGTCATCCCAAAGCATAATAAAAATGTTATACGAGTAATGCTGTGAATTAAAGCAGAAAATCATCTGAAGGTGAGAGGTAGGTTTATTCATTAGGCCATTATACTGTTGTAACGCTGTATGGGCAGCACGGTTACCACAGCAGAGCACACTGCATATATATTTCAGTGGTTGGAAGCAGTTTGTTAAATTGTTAATAATTTGTAATCTGTAGCATAATGACACCACACACAGGCATAGGTTAACCGAACAACAAGCACACCCCCGTTTATACAGTCAGTCACATAAAACAAAAAGTCAATAAAAAATTATATAAATAAGTGTTAAGTCCTCAATGATTTTGTGAAAAACTAGTGAAACAGTTTAAATAATGAATATCTTGTCATCATGATTTTATTCCATAGTGTAGTTAACCAGAATGTAGCCACTGAGCAGCTAAACATACAAGCCATCCACTAAGTATTACATGTGCAGACGTTTTTCATTGAGTATACAAGATTGACAGTTTCCATAATTTAGTATATTCTCCTCATTTCAAACCCCTTTAAGATTTTAGATTAATTCTGAGGAATTGTACATTAATTCTGCAGAAGTCAAGCAAACAAACTCCTGTAATCACTGTCCATGGACAAATGACACAAAAGAAAACCTTTAGGGACTGgcgaatgtgtgtgtgttttctgggcgaatgtgtgtgtgtgtgtatgttttctgggcgaatgtgtgtgtgttttctgggcgaaggtgtgtgtgaggtggaggAAGCCGTAATGAACCACGGTAATGCTAGAGTATAGAGAAGACACTAGATGCAACAAGCCCTGAGAATAGCAGCCTTCTGATCCTCCATCTTCTGTCCCTCAGCAGCAAGGTGACAGGACAGAGTATCCAAACTATCTGGAACAGGGCTGAGCACCCACTACCAGGAAGCACTGTGGACAGCCCTCTTCACCCTTCAGGAAGCACGGTGGACAGCAGCAGCAttactgtcctcctcctctcctttcctcatagTAATTGTGTAGTCTGTGTTGAGTTATTCTCTGTGTAGTCCTCTGGAGCTCCAGAGCAGGCCGGTCACCCTGGCCTCAAACCCCCAGGACCCTGCTCACTGGATCAGACCCACACTTCATTctgttgtttttctctctcaGGTTCTACATCTTTCAAACTCCTCCCTACCCTAAATGCTGCAGTAGAAAGTTGGTTGCCACGTTGATGTCGTTGTTGGATGCTCTGAGGGCATCCTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU645151 False 870 lncRNA 0.49 2 853409 856963
TU645150 False 844 lncRNA 0.47 2 853555 854769
TU645148 True 1916 lncRNA 0.43 2 855023 856963

Neighbor

gene id symbol gene type direction distance location
LOC110528715 LOC106594730 coding downstream 10721 831066 ~ 842688 (-)
LOC118936671 LOC106574830 coding downstream 35042 725007 ~ 818367 (-)
LOC110487686 bora coding downstream 144532 700093 ~ 708877 (-)
LOC110527172 LOC106575921 coding downstream 171982 677077 ~ 681427 (-)
LOC118965201 LOC106583510 coding downstream 180218 669059 ~ 673191 (-)
LOC110495363 LOC106574929 coding upstream 34829 891792 ~ 896858 (-)
LOC110517159 LOC106596293 coding upstream 106491 963454 ~ 976670 (-)
LOC118936672 LOC106596203 coding upstream 264863 1121826 ~ 1148001 (-)
LOC110495354 LOC106593697 coding upstream 366450 1223413 ~ 1247319 (-)
LOC118965204 LOC106592365 coding upstream 390687 1247650 ~ 1284997 (-)
G566740 NA non-coding downstream 60617 790337 ~ 792792 (-)
G566731 NA non-coding downstream 104145 747928 ~ 749264 (-)
G566725 NA non-coding downstream 111547 740040 ~ 741862 (-)
G566759 NA non-coding upstream 21363 878326 ~ 878718 (-)
G566781 NA non-coding upstream 90725 947688 ~ 947889 (-)
G566783 NA non-coding upstream 94874 951837 ~ 954510 (-)
G566785 NA non-coding upstream 98569 955532 ~ 956045 (-)
G566789 NA non-coding upstream 104383 961346 ~ 962495 (-)
LOC110519328 LOC106574843 other downstream 311703 527767 ~ 541749 (-)
LOC118965198 LOC106595074 other downstream 378931 473884 ~ 477537 (-)
LOC110519534 LOC106575793 other downstream 602216 242557 ~ 279418 (-)
G567147 NA other upstream 346912 1203875 ~ 1207277 (-)
G567242 NA other upstream 622389 1479352 ~ 1480049 (-)
G567318 LOC106592056 other upstream 714396 1571359 ~ 1571804 (-)
LOC110527180 LOC106575808 other upstream 755905 1611276 ~ 1636199 (-)

Expression


Co-expression Network