G566785


Basic Information

Item Value
gene id G566785
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 955532 ~ 956045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU645204
AAAACAGGATGTTTTAGGCTTAGTTATAGTGAAACACATCAACCCTGGTCTTCATTTTGACAGTTTGTTGCAAAAGTGATATATTCAGGTCTTTCAGTAATAAATCTAGCTCCTTGTCCCTAGTGGTTCAACTCTACCATCGACATGGTGATGTAGAGGCGCCCCTACGTCATCAAAGGGAGGGGTTCAGTATGAAATCCACTCCCTTCTAGATGCAGGTTGTGGAGTGGGCCAATATATTTAGCATGATGCTTCCTTGAATACTGACGCTACACAACATACAAAAGGCAGTGAAGGCACATACCCGCACATGACCAAATTCAACGTTTTAGCTTACCGTTTCAAACACATCAATCTGGTATACcaagaaaaaatacaaaatgatacgtatgtacagttgaagtcggaagtttacatacaattaggttggagtcattaaaactcgtttttcaaccactccacaaatt
>TU645206
CCCCTCTACCAGTCCTCACAGTATTTAAAGAGTAACTTTCAAGACAAAAAACAGGATGTTTTAGGCTTAGTTATAGTGAAACACATCAACCCTGGTCTTCATTTTGACAGTTTGTTGCAAAAGTGATATATTCAGGTCTTTCAGTAATAAATCTAGCTCCTTGTCCCTAGTGGTTCAACTCTACCATCGACATGGTGATGTAGAGGCGCCCCTACGTCATCAAAGGGAGGGGTTCAGTATGAAATCCACTCCCTTCTAGATGCAGGTTGTGGAGTGGGCCAATATATTTAGCATGATGCTTCCTTGAATACTGACGCTACACAACATACAAAAGGCAGTGAAGGCACATACCCGCACATGACCAAATTCAACGTTTTAGCTTACCGTTTCAAACACATCAATCTGGTATACcaagaaaaaatacaaaatgatacgtatgtacagttgaagtcggaagtttacatacaattaggttggagtcattaaaactcgtttttcaaccactccacaaatt
>TU645203
CCCCTCTACCAGTCCTCACAGTATTTAAAGAGTAACTTTCAAGACAAAAAACAGGATGTTTTAGGCTTAGTTATAGTGAAACACATCAACCCTGGTCTTCATTTTGACAGTTTGTTGCAAAAGTGATATATTCAGGTCTTTCAGTAATAAATCTAGCTCCTTGTCCCTAGTGGTTCAACTCTACCATCGACATGGTGATGTAGAGGCGCCCCTACGTCATCAAAGGGAGGGGTTCAGTATGAAATCCACTCCCTTCTAGATGCAGGTTGTGGAGTGGGCCAATATATTTAGCATGATGCTTCCTTGAATACTGACGCTACACAACATACAAAAGGCAGTGAAGGCACATACCCGCACATGACCAAATTCAACGTTTTAGCTTACCGTTTCAAACACATCAATCTGGTATACcaagaaaaaat
>TU645205
AAAACAGGATGTTTTAGGCTTAGTTATAGTGAAACACATCAACCCTGGTCTTCATTTTGACAGTTTGTTGCAAAAGTGATATATTCAGGTCTTTCAGTAATAAATCTAGCTCCTTGTCCCTAGTGGTTCAACTCTACCATCGACATGGTGATGTAGAGGCGCCCCTACGTCATCAAAGGGAGGGGTTCAGTATGAAATCCACTCCCTTCTAGATGCAGGTTGTGGAGTGGGCCAATATATTTAGCATGATGCTTCCTTGAATACTGACGCTACACAACATACAAAAGGCAGTGAAGGCACATACCCGCACATGACCAAATTCAACGTTTTAGCTTACCGTTTCAAACACATCAATCTGGTATACcaagaaaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU645204 False 467 lncRNA 0.40 1 955532 955998
TU645206 False 514 lncRNA 0.40 1 955532 956045
TU645203 False 422 lncRNA 0.41 1 955624 956045
TU645205 True 375 lncRNA 0.41 1 955624 955998

Neighbor

gene id symbol gene type direction distance location
LOC110495363 LOC106574929 coding downstream 58674 891792 ~ 896858 (-)
LOC110528715 LOC106594730 coding downstream 112844 831066 ~ 842688 (-)
LOC118936671 LOC106574830 coding downstream 137165 725007 ~ 818367 (-)
LOC110487686 bora coding downstream 246655 700093 ~ 708877 (-)
LOC110527172 LOC106575921 coding downstream 274105 677077 ~ 681427 (-)
LOC110517159 LOC106596293 coding upstream 7409 963454 ~ 976670 (-)
LOC118936672 LOC106596203 coding upstream 165781 1121826 ~ 1148001 (-)
LOC110495354 LOC106593697 coding upstream 267368 1223413 ~ 1247319 (-)
LOC118965204 LOC106592365 coding upstream 291605 1247650 ~ 1284997 (-)
LOC110496997 LOC106595477 coding upstream 329210 1285255 ~ 1312938 (-)
G566783 NA non-coding downstream 1022 951837 ~ 954510 (-)
G566781 NA non-coding downstream 7643 947688 ~ 947889 (-)
G566759 NA non-coding downstream 76814 878326 ~ 878718 (-)
G566742 NA non-coding downstream 81237 811495 ~ 874295 (-)
G566750 NA non-coding downstream 98569 853409 ~ 856963 (-)
G566789 NA non-coding upstream 5301 961346 ~ 962495 (-)
G566803 NA non-coding upstream 24568 980613 ~ 980819 (-)
G567041 LOC107654276 non-coding upstream 28962 985007 ~ 986215 (-)
G567042 NA non-coding upstream 29028 985073 ~ 985476 (-)
LOC110519328 LOC106574843 other downstream 413826 527767 ~ 541749 (-)
LOC118965198 LOC106595074 other downstream 481054 473884 ~ 477537 (-)
LOC110519534 LOC106575793 other downstream 704339 242557 ~ 279418 (-)
G567147 NA other upstream 247830 1203875 ~ 1207277 (-)
G567242 NA other upstream 523307 1479352 ~ 1480049 (-)
G567318 LOC106592056 other upstream 615314 1571359 ~ 1571804 (-)
LOC110527180 LOC106575808 other upstream 656823 1611276 ~ 1636199 (-)

Expression


Co-expression Network