XLOC_025060 (trim35-10)


Basic Information

Item Value
gene id XLOC_025060
gene name trim35-10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 8290595 ~ 8297250 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049592
CTGGAGCTCAAACTGGGAAAATGGCTTCGCTTTCTGATGATTTTTCGTGTCCCGTGTGCTGTGAAATCTTCAAGGATCCAGTTTTTCTGTCGTGCAGTCACAGTTTCTGTAAAAAGTGTCTTCAGCAGTACTGGAGTACCACGGAAACTGAAGAGTGTCCTGTTTGCCGGAGAAAATCCTCCAGAGATGATCCTCCAATTAATCTTGTGTTAAGAAACTTGTGTGAGTTGTTCCTGAAGGAGAAAAACGAGAGATGTTCATCGGTATCTGAGGAGATCTGCAGTTTACACGGTGAGAAACTCAAACTCTTCTGTCTGGAGGACAAACAGCctttgtgtgtgatgtgtgtcACTTTACAGCAACATGAGAATCACAAATTCAAGCCCATCGATGAAGCCATTCCAATGTGTAAGgAGGAGTTCAATGCGGCAGTGACGTCCTTAAAGTGGAAACTTAAACGCAGGGAAAAAATGAAAGGACAGTTGGAGGAAACGCTTCAACACATCAAGACTCAAGCTGATCACACAGAGCGTCAGATTAAACATGAGTTTGAGAGGCTTCATCAGTTTCTCCGAGATGAAGAAGAAGCTACAATCACTGCACTGAGGGAGGAAGAGGAGCAGAAGAAGCAGATGATGAAGGAGAAGCTGGaggagatgaacacacacatcgcAGCTCTTTCACACACAATCAAAGACTCGGAGGAGATGCTGAAAGCCAATGACGTCTGCTTTCTAAAGGAGTTTCCAGTCTCGATGGAAAGAGTCCAGATCTCACAGCCGGATCCACAGACGCCTTCTGGAGCTTTGATTAATGTGTCTTGCTACTTGGGGAACCTGCCGTTCAGAGTCTGGAAGAAGATGCAGGACATTGTCTACTATACTCCTGTGATTCTGGATCCAAACACTGCAAATTCAAGTCTCGTCCTCTCTGATGATCTGACCAGTATGGCAAGAGATATAATTATAGAACTGCGCCCTCATAATCCTGAAAGATTTGACAGTTATTGCTGTGTTCTGGGTTCAGAGGGGTTTACCTCAGGAACACACTACTGGGATGTGGAGGTCAACGAGAGCCCAGGCTGGAGTCTTGGAGTAACTACAGCATCAAAACAAAGGAAGGGACGAGTTTTCTTCAACACAGATTTCTGGGGCGTGCAGTGTGGACCGTTTCAGCTGCCTGGCGTTCAGGTTCAGAAGGATCTTGAGTGTGTGAGAGTTGATCTGGACTGTGACAGTGGAACAGTGTCTTTCTCTGATCCTGTAACAAACACACATctacacacattcacacccacCCTCACTGAGTCTGTCTTTCCATTCTTCTGCAGCTATTTTCCTCTGAGGATCTTACCACTCGGTAGTATTCAAATGTTAGAGGAGTAGGT
>TCONS_00049593
CAAGCTGATCACACAGAGCGTCAGATTAAACATGAGTTTGAGAGGCTTCATCAGTTTCTCCGAGATGAAGAAGAAGCTACAATCACTGCACTGAGGGAGGAAGAGGAGCAGAAGAAGCAGATGATGAAGGAGAAGCTGGaggagatgaacacacacatcgcAGCTCTTTCACACACAATCAAAGACTCGGAGGAGATGCTGAAAGCCAATGACGTCTGCTTTCTAAAGGAGTTTCCAGTCTCGATGGAAAGAGTCCAGATCTCACAGCCGGATCCACAGACGCCTTCTGGAGCTTTGATTAATGTGTCTTGCTACTTGGGGAACCTGCCGTTCAGAGTCTGGAAGAAGATGCAGGACATTGTCTACTATACTCCTGTGATTCTGGATCCAAACACTGCAAATTCAAGTCTCGTCCTCTCTGATGATCTGACCAGTATG

Function

symbol description
trim35-10 Predicted to enable zinc ion binding activity. Orthologous to human TRIM35 (tripartite motif containing 35).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-36 Predicted to enable zinc ion binding activity. Orthologous to human TRIM35 (tripartite motif containing 35).

Ensembl:

ensembl_id ENSDARG00000033071

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049592 False 1387 mRNA 0.46 6 8290595 8297250
TCONS_00049593 True 438 mRNA 0.47 4 8295335 8296813

Neighbor

gene id symbol gene type direction distance location
XLOC_025059 si:ch73-379f5.5 coding upstream 63386 8224622 ~ 8227209 (+)
XLOC_025058 BX927317.3 coding upstream 187904 8094011 ~ 8102691 (+)
XLOC_025057 trir coding upstream 456089 7822948 ~ 7834506 (+)
XLOC_025056 hook2 coding upstream 470755 7763114 ~ 7819840 (+)
XLOC_025055 NA coding upstream 537421 7714364 ~ 7753174 (+)
XLOC_025061 FP243381.1 coding downstream 92305 8389555 ~ 8389671 (+)
XLOC_025062 NA coding downstream 509068 8806318 ~ 8806749 (+)
XLOC_025063 NA coding downstream 516805 8814055 ~ 8814377 (+)
XLOC_025064 si:dkeyp-30d6.2 coding downstream 528132 8825382 ~ 8836722 (+)
XLOC_025065 NA coding downstream 550517 8847767 ~ 8849729 (+)
XLOC_025429 BX649540.1 misc downstream 21951489 30248739 ~ 30249036 (+)
XLOC_025053 NA non-coding upstream 732068 7510588 ~ 7558527 (+)
XLOC_025052 NA non-coding upstream 778985 7493581 ~ 7511610 (+)
XLOC_025051 NA non-coding upstream 811538 7477765 ~ 7479057 (+)
XLOC_025066 NA non-coding downstream 577706 8874956 ~ 8875830 (+)

Expression


Co-expression Network