XLOC_025064 (si:dkeyp-30d6.2)


Basic Information

Item Value
gene id XLOC_025064
gene name si:dkeyp-30d6.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 8825382 ~ 8836722 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049595
agggtatctgctgcgcaAAAGATATTTTCTGACATGTGTTATCCTTTAGGATTTGCTCTGGGCGGCACTATTGAATCCAAGACAAAGGGCATCTGGATGTGGTGTGTGCCCCATCCCACTAAAACAGGAACCACTCTCGTGCTGCTGGACACTGAGGGACTCGGAGATGTGGAAAAGGGTGACTCGAAGCATGACACCAACATCTTCTGTCTGGCTGTGCTCCTGAGCAGCACTTTGGTTTACAACAGCCGTGGGACGATCAACAACAGGGCCATAGAGGAGCTCCAATATGTTACTGAACTAACAGAGTGCATCAAGGTCAAATCGTCAGATGAAGATGTTGATGATTCCACTGAGTTTGTAAAATTCTTTCCTAGTTTCATCTGGTCTGTGAGGGACTTCACCCTCGAGCGAAAGATTGATGGCAAAGATGCCACAGAGGATGAATATCTAGAGTTTGCTCTGAAGCTGAAACCTGGTAATATACTTGAAGCGATTGAAAGATGGACACACGGTCACTGGCAGAGGTGA
>TCONS_00049596
AGGCATTAAAGTtatgtattaaaaataagctACAATATTGGAAGTTTTTGCTTGCAAGCAACTCATCTCGAAGCTAGACGGATAACTTAAGCAAAAGGCTCCAGTGTTTTAAGTAAGCATGGACAAACCAGTGTGCCTGATCAACACAGACTCAGATGGGAAGCTGTATGTGCAGCCGGCGGCACTGCAGGTCTTGCAGCAGATCCAGCAGCCGGTGGTGGTGGTGGCCGTGGTGGGTCTCTACCGCACCGGGAAGTCCTACCTAATGAACCACCTGGCTGGGAAACAAACAGGATTTGCTCTGGGCGGCACTATTGAATCCAAGACAAAGGGCATCTGGATGTGGTGTGTGCCCCATCCCACTAAAACAGGAACCACTCTCGTGCTGCTGGACACTGAGGGACTCGGAGATGTGGAAAAGGGTGACTCGAAGCATGACACCAACATC
>TCONS_00049597
TACATTCTTTCAGTGTATTACTACATTTTGTACTGCTCTTTAAAATGGAGAGTCCAATTTCTAGTGTTTGCTGTTAACCTCAGTTTATCTATAGATTATTATATGTGTAATGCAAGTATTTTCTGGGGCTTTTCTTCTTAACGTGTTTATGTGTGTTGAGaaactcttttacacacacaatcAGCTGTGAAGTGTTTGACTTCTGGCACACTGCAGCTCCTCAGATCTCTTCAGTTACGTGTGTTTATGGGTTGGACAGCTCCAGTGTTTTAAGTAAGCATGGACAAACCAGTGTGCCTGATCAACACAGACTCAGATGGGAAGCTGTATGTGCAGCCGGCGGCACTGCAGGTCTTGCAGCAGATCCAGCAGCCGGTGGTGGTGGTGGCCGTGGTGGGTCTCTACCGCACCGGGAAGTCCTACCTAATGAACCACCTGGCTGGGAAACAAACAGGATTTGCTCTGGGCGGCACTATTGAATCCAAGACAAAGGGCATCTGGATGTGGTGTGTGCCCCATCCCACTAAAACAGGAACCACTCTCGTGCTGCTGGACACTGAGGGACTCGGAGATGTGGAAAAGGGTGACTCGAAGCATGACACCAACATCTTCTGTCTGGCTGTGCTCCTGAGCAGCACTTTGGTTTACAACAGCCGTGGGACGATCAACAACAGGGCCATAGAGGAGCTCCAATATGTTACTGAACTAACAGAGTGCATCAAGGTCAAATCGTCAGATGAAGATGTTGATGATTCCACTGAGTTTGTAAAATTCTTTCCTAGTTTCATCTGGTCTGTGAGGGACTTCACCCTCGAGCGAAAGATTGATGGCAAAGATGCCACAGAGGATGAATATCTAGAGTTTGCTCTGAAGCTGAAACCTGGCACTTCGAAAAAAATAACAAGCTTCAACCTTCCCAGGGAGTGCATTCAAAAATTCTTTCCCACCAGGACATGCTTCACTTTCCCATTTCCAACTGCTCCAGAGAAAATGTCCACTCTGGAGAGCTTGAGTCCTGCTGACCTTTCCACTGAGTTCCTGGAGGTCACCAAACGTTTCTGTAAGTTTGTCTTTGACAAGAGCGAAGTGAAGCGATTGAAAGATGGACACACGGTCACTGGCAGAGTTCTGGGTAATCTAACAAAGATGTACGTGAACACAATCTCCAGTGGGGCTGTGCCTTGTCTGGAGAATGCAGTGATTGCCATGGCCCAGATTGAGAATGTGGCCGCAACGCAGGAGGGTCTGGAGGTGTACCAGAGAGGAATGGAGAAGGTTAAGTGCTCCTTCCCCCTGGAGCTGGAGCAAGTCTCCTCAGAGCACCAACGCCTCAGCAGCAAGGCTACGCAAGCCTTCATGGCTCGATCATTCAAGGACACTGATGGGAAGCACCTGAAGGTTCTTGAG

Function

symbol description
si:dkeyp-30d6.2 Predicted to enable GTP binding activity and GTPase activity. Orthologous to several human genes including GBP1 (guanylate binding protein 1); GBP2 (guanylate binding protein 2); and GBP3 (guanylate binding protein 3).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-83 Predicted to enable GTP binding activity and GTPase activity. Orthologous to several human genes including GBP1 (guanylate binding protein 1); GBP2 (guanylate binding protein 2); and GBP3 (guanylate binding protein 3).

Ensembl:

ensembl_id ENSDARG00000103564

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049595 False 531 mRNA 0.47 5 8825382 8836344
TCONS_00049596 False 448 mRNA 0.50 4 8826905 8831282
TCONS_00049597 True 1407 mRNA 0.48 7 8827013 8836722

Neighbor

gene id symbol gene type direction distance location
XLOC_025063 NA coding upstream 11005 8814055 ~ 8814377 (+)
XLOC_025062 NA coding upstream 18633 8806318 ~ 8806749 (+)
XLOC_025061 FP243381.1 coding upstream 435711 8389555 ~ 8389671 (+)
XLOC_025060 trim35-10 coding upstream 528132 8290595 ~ 8297250 (+)
XLOC_025059 si:ch73-379f5.5 coding upstream 598173 8224622 ~ 8227209 (+)
XLOC_025065 NA coding downstream 11045 8847767 ~ 8849729 (+)
XLOC_025066 NA coding downstream 38234 8874956 ~ 8875830 (+)
XLOC_025067 NA coding downstream 141510 8978232 ~ 8978689 (+)
XLOC_025068 NA coding downstream 142014 8978736 ~ 8980215 (+)
XLOC_025069 CR926128.1 coding downstream 191772 9028494 ~ 9028642 (+)
XLOC_025429 BX649540.1 misc downstream 21412017 30248739 ~ 30249036 (+)
XLOC_025058 BX927317.3 non-coding upstream 722691 8094011 ~ 8102691 (+)
XLOC_025055 NA non-coding upstream 1072208 7714364 ~ 7753174 (+)

Expression


Co-expression Network