XLOC_025067


Basic Information

Item Value
gene id XLOC_025067
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 8978232 ~ 8978689 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052324
ATGATTGCTACCAGGTGGACACAGTTAcctgcagggagagagagagaggaaaaacacaatGCTCATTGTCCACCAAAAGATATGTCTCAGGACGCAAGCCCTGGGATAACCGTTATCACCCTCCTGGAGCATATACAGgtgaattGCTGGGAATGGAGCACCTTTACAGCCAGACCGGCAAAACCCTGACTCCGGTGCTCCAGAACCCAGAGGAGGAAGACAGGCTGGTGGAGGAAGTACATGACGAGGATCTACAAGATGACGGGTTTGAGTAGGAGATCATGGAGGACATCACAGTTCAAGTGCTGTATGAGGATGAC

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0016462 pyrophosphatase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0016817 hydrolase activity, acting on acid anhydrides molecular_function
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140097 catalytic activity, acting on DNA molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052324 True 320 lncRNA 0.51 2 8978232 8978689

Neighbor

gene id symbol gene type direction distance location
XLOC_025066 NA coding upstream 102402 8874956 ~ 8875830 (+)
XLOC_025065 NA coding upstream 128503 8847767 ~ 8849729 (+)
XLOC_025064 si:dkeyp-30d6.2 coding upstream 141510 8825382 ~ 8836722 (+)
XLOC_025063 NA coding upstream 163855 8814055 ~ 8814377 (+)
XLOC_025062 NA coding upstream 171483 8806318 ~ 8806749 (+)
XLOC_025068 NA coding downstream 47 8978736 ~ 8980215 (+)
XLOC_025069 CR926128.1 coding downstream 49805 9028494 ~ 9028642 (+)
XLOC_025070 CR926128.4 coding downstream 52681 9031370 ~ 9031520 (+)
XLOC_025071 NA coding downstream 53516 9032205 ~ 9033012 (+)
XLOC_025072 CR926128.5 coding downstream 56987 9035676 ~ 9035776 (+)
XLOC_025429 BX649540.1 misc downstream 21270050 30248739 ~ 30249036 (+)
XLOC_025061 FP243381.1 non-coding upstream 588561 8389555 ~ 8389671 (+)

Expression


Co-expression Network