XLOC_025068


Basic Information

Item Value
gene id XLOC_025068
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 8978736 ~ 8980215 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052325
GGTGCTTGGCAGTCGCAGGCTGATGGATGAAACAGTGATCCAGCTTTTTGAGCTAAATCAGAAGACGCTCATTCAGTGGTTTCAACGGAGGCAAAAGGATCAGGAAATGAGTGTACTCACTCAGGGACTGACTCCACTTGATCCAATTGCTGTGGCAGATACGCAGCTTCCTTTGCCGAGGGGAAAATTGGACGAGGCACCGACAACATCAGGCCCCAAACACAAGTTTGTCTTTCCTCCAAATAAAGAAGGACAGGCACCTCTTCTTCGACCTGGTCAAAAGTCTGCTTCTGCAACCACCACAGTTTGCTCCTTCCTGCCGGATGTCACCACGGTTTGCTCCTTTCCACCGGCCCCCACGACGGTATGCCCAATCACGCCAACCCCCACCACAGTCTGCCACATTGCACCAGCCCCTACCATGGTGTGCCCCGTCACACCGACCttcaccacagtgcgccccatcTCGCCAGCCTCTACCACAGTGTGCCCCATCataccagcctccaccacagtgcgccctATTGCGCCGGCCCCCACCACAGTGCGCCTCATTGTATCTGCccccaccacggtgtgctcctttccaccgaCCCCCAGCACGGTGTGCCCCATTGCACCACCCCCCACAGCACCAGATGTTGTGCAGCCTATTTCAGGACCTGGATCATTGTTTGGCacacttgtttttaacccagacatgagtgtgtcaatggtgattccatcatttgctgcaccaacatccagtgcagtcccagcttcacctgcacctgctgttcctccacctgcacctgctccacctgcacctgctgttcctccacctgcacctgctccacctgcacctgctgttcctccacctgcacctgctccacctgcgcCTGCTGTTCCTGTGTCCCGTTACACCCAGAGAAACAGGCGCAGACGGGAACAGGAGAAGAAAAGTGTTTGCAGCTAATGTGAGCAACCAAAGACTAAGGAGTTTGGCCATAGCCGATTTGTCCTTAGAGGACTGGTTGGCAGAACAGCGCcagcaaaataaaggacaaactccagctccagaataaaggacaaattgctgtatatatttttgtaaatgttacatgggtactctctctctctcattttatttaatttttgtgtgttaatatttagcattttaaagtggcacttataggcccactcttattttgtcttgtgtgtacttatttaatatttgtgtgcattttatgtaaaaatatatttatatttctttaaaaaaataaaattttatacattgcttaaatactatattttatatattacgtgCCCCCACTCttgcattttattatgtatttatattattgtttaatatattgtgtatataaaactaaatatatatatatagagtattgttttt

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1904029 regulation of cyclin-dependent protein kinase activity biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0044843 cell cycle G1/S phase transition biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000785 chromatin cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0005694 chromosome cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052325 True 1396 lncRNA 0.47 2 8978736 8980215

Neighbor

gene id symbol gene type direction distance location
XLOC_025067 NA coding upstream 47 8978232 ~ 8978689 (+)
XLOC_025066 NA coding upstream 102906 8874956 ~ 8875830 (+)
XLOC_025065 NA coding upstream 129007 8847767 ~ 8849729 (+)
XLOC_025064 si:dkeyp-30d6.2 coding upstream 142014 8825382 ~ 8836722 (+)
XLOC_025063 NA coding upstream 164359 8814055 ~ 8814377 (+)
XLOC_025069 CR926128.1 coding downstream 48279 9028494 ~ 9028642 (+)
XLOC_025070 CR926128.4 coding downstream 51155 9031370 ~ 9031520 (+)
XLOC_025071 NA coding downstream 51990 9032205 ~ 9033012 (+)
XLOC_025072 CR926128.5 coding downstream 55461 9035676 ~ 9035776 (+)
XLOC_025073 CR926128.10 coding downstream 55975 9036190 ~ 9036296 (+)
XLOC_025429 BX649540.1 misc downstream 21268524 30248739 ~ 30249036 (+)
XLOC_025062 NA non-coding upstream 171987 8806318 ~ 8806749 (+)

Expression


Co-expression Network