XLOC_002507 (srsf9)


Basic Information

Item Value
gene id XLOC_002507
gene name srsf9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1686975 ~ 1697074 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004677
CGCGTGCGCTTGTTTATCCTGTGTTTTTATCACGAGCTGCAAATTATACAGGCTGCAGGTTTTGCGGAGTTTAAGCCATGTCGGACGGACGGATCTACGTGGGAAACCTTCCCATGGACGTCCAGGAGAGGGACATTGAGGATCTCTTCTTCAAATACGGAAAAATTCGGGATATTGAGCTGAAGAACAACAGAAGCACCATCCCGTTTGCCTTTGTGCGATTTGAGGACCCACGGGATGCGGAGGATGCCGTCTTTGGAAGGAATGGATATGGATTTGGAGACTGTAAGCTGCGTGTGGAATACCCTCGTTCTTCTGGATCCAAATTTAGTGGAcctgcaggaggaggaggaggaggaggaccaAGAGGAAGGTTTGGACCCCCGACTCGCAGATCTGAGTTTCGGGTTATCGTGACGGGTCTTCCTCCCACTGGCAGCTGGCAGGACCTGAAGGACCACATGCGGGAGGCCGGAGACGTGTGTTTCGCAGACGTGCAGCGTGACGGTGAGGGGGTTGTGGAGTTCCTCAGGCGGGAGGACATGGAGTACGCACTGCGACGTCTGGACAGCACAGAGTTCAGATCCCACCAGGGAGAGACGGCCTACATCAGAGTGATGGAGGAGCGAGGCACAAGCTGGGGCCGCTCGCGCTCTCGGTCCAGATCTCGGGGACGATACACGCCTCCGTATCAAAGCAGAGGGTCACCGCCGCCCCGCTACCGCTCACCCCCGCGCCACATGACCCGCCATAGCCCACCGTCCCGCCGGCCGCCGCTCCAGCACCACAGCCCGCCGCCACGCCACTATCGATGAGCGCACCACAGCCCGTCACCATGCCCTTGACGTCTCTTGATTTCGTAATTTACATTCCATTGTAGGAACCCGAATGGCCTTATTCATCGTTTATTTCATGGAGAGTGTGTAACCGATGCGCCAGCGACGCTTGTCGGAGATCTGAAGATGAATAACCCGTTTAGTCCTTTGTGATTATTTACATGAGGCAACAAGACTAAGGATGTGCTGTTTAGTGCTTTATCTGGTCCATTTCATTGACATGACAGTTTTATTGCTTTGTGGGgggttttatatataatttgagcAGAAGGCTGAAATTTTAAACAGAAGTTTCTTTATTGAGTCTCCCCGTGTGATTGTTTCTTGTTTTGTATCGTGAGGATTGTatgcttaatttttatttcttttctttttttcaattaaagCTTTGAATCGGAGAGACTGAA
>TCONS_00004678
GGGAGGGGAAGCGCGTGCGCTTGTTTATCCTGTGTTTTTATCACGAGCTGCAAATTATACAGTTTTCAGACTGTGGTCCTGAAGAGGATCCTGTGCTGGCTTTCTTGAACTCGACATGTGCCGCGTCTGGCAAAGTTTAGAGTTGTAAATAGAAATTTTTGTAGACGGACGGACTAGAGTTTGGATGTTCTGAAAACACCCCTgacgtggaaaaaaaaaaaacgctctaTTTCCTCGAAGGCTGCAGGTTTTGCGGAGTTTAAGCCATGTCGGACGGACGGATCTACGTGGGAAACCTTCCCATGGACGTCCAGGAGAGGGACATTGAGGATCTCTTCTTCAAATACGGAAAAATTCGGGATATTGAGCTGAAGAACAACAGAAGCACCATCCCGTTTGCCTTTGTGCGATTTGAGGACCCACGGGATGCGGAGGATGCCGTCTTTGGAAGGAATGGATATGGATTTGGAGACTGTAAGCTGCGTGTGGAATACCCTCGTTCTTCTGGATCCAAATTTAGTGGAcctgcaggaggaggaggaggaggaggaccaAGAGGAAGGTTTGGACCCCCGACTCGCAGATCTGAGTTTCGGGTTATCGTGACGGGTCTTCCTCCCACTGGCAGCTGGCAGGACCTGAAGGACCACATGCGGGAGGCCGGAGACGTGTGTTTCGCAGACGTGCAGCGTGACGGTGAGGGGGTTGTGGAGTTCCTCAGGCGGGAGGACATGGAGTACGCACTGCGACGTCTGGACAGCACAGAGTTCAGATCCCACCAGGGAGAGACGGCCTACATCAGAGTGATGGAGGAGCGAGGCACAAGCTGGGGCCGCTCGCGCTCTCGGTCCAGATCTCGGGGACGATACACGCCTCCGTATCAAAGCAGAGGGTCACCGCCGCCCCGCTACCGCTCACCCCCGCGCCACATGACCCGCCATAGCCCACCGTCCCGCCGGCCGCCGCTCCAGCACCACAGCCCGCCGCCACGCCACTATCGATGAGCGCACCACAGCCCGTCACCATGCCCTTGACGTCTCTTGATTTCGTAATTTACATTCCATTGTAGGAACCCGAATGGCCTTATTCATCGTTTATTTCATGGAGAGTGTGTAACCGATGCGCCAGCGACGCTTGTCGGAGATCTGAAGATGAATAACCCGTTTAGTCCTTTGTGATTATTTACATGAGGCAACAAGACTAAGGATGTGCTGTTTAGTGCTTTATCTGGTCCATTTCATTGACATGACAGTTTTATTGCTTTGTGGGgggttttatatataatttgagcAGAAGGCTGAAATTTTAAACAGAAGTTTCTTTATTGAGTCTCCCCGTGTGATTGTTTCTTGTTTTGTATCGTGAGGATTGTatgcttaatttttatttcttttctttttttcaattaaagCTTTGAATCGGA
>TCONS_00004679
GGGCCTTTGTGTCACTTCCTGATCCGGGGAGGGGAAGCGCGTGCGCTTGTTTATCCTGTGTTTTTATCACGAGCTGCAAATTATACAGTTTTCAGACTGTGGTCCTGAAGAGGATCCTGTGCTGGCTTTCTTGAACTCGACATGTGCCGCGTCTGGCAAAGTTTAGAGTTGTAAATAGAAATTTTTGTAGACGGACGGACTAGAGTTTGGATGTTCTGAAAACACCCCTgacgtggaaaaaaaaaaaacgctctaTTTCCTCGAAGGCTGCAGGTTTTGCGGAGTTTAAGCCATGTCGGACGGACGGATCTACGTGGGAAACCTTCCCATGGACGTCCAGGAGAGGGACATTGAGGATCTCTTCTTCAAATACGGAAAAATTCGGGATATTGAGCTGAAGAACAACAGAAGCACCATCCCGTTTGCCTTTGTGCGATTTGAGGACCCACGGTGAGTCGCACGGCCTCAGAGAACACAGGGGACGAGGCTTTTTCTGGTGTAGAACGAAAATTAGGAGCACTTTCCTCTCTTCCTCTAGGGATGCGGAGGATGCCGTCTTTGGAAGGAATGGATATGGATTTGGAGACTGTAAGCTGCGTGTGGAATACCCTCGTTCTTCTGGATCCAAATTTAGTGGAcctgcaggaggaggaggaggaggaggaccaAGAGGAAGGTTTGGACCCCCGACTCGCAGATCTGAGTTTCGGGTTATCGTGACGGGTCTTCCTCCCACTGGCAGCTGGCAGGACCTGAAGGACCACATGCGGGAGGCCGGAGACGTGTGTTTCGCAGACGTGCAGCGTGACGGTGAGGGGGTTGTGGAGTTCCTCAGGCGGGAGGACATGGAGTACGCACTGCGACGTCTGGACAGCACAGAGTTCAGATCCCACCAGGGAGAGACGGCCTACATCAGAGTGATGGAGGAGCGAGGCACAAGCTGGGGCCGCTCGCGCTCTCGGTCCAGATCTCGGGGACGATACACGCCTCCGTATCAAAGCAGAGGGTCACCGCCGCCCCGCTACCGCTCACCCCCGCGCCACATGACCCGCCATAGCCCAC

Function

symbol description
srsf9 Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human SRSF9 (serine and arginine rich splicing factor 9).

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko05168 Herpes simplex virus 1 infection
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-2397 Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human SRSF9 (serine and arginine rich splicing factor 9).

Ensembl:

ensembl_id ENSDARG00000008097

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004677 False 1243 mRNA 0.52 5 1686975 1697037
TCONS_00004678 False 1423 mRNA 0.51 5 1686984 1697048
TCONS_00004679 True 1062 lncRNA 0.54 4 1687459 1697074

Neighbor

gene id symbol gene type direction distance location
XLOC_002504 NA coding downstream 19345 1666342 ~ 1667630 (-)
XLOC_002503 nup155 coding downstream 50523 1597270 ~ 1636452 (-)
XLOC_002502 CABZ01066320.1 coding downstream 134186 1544163 ~ 1552789 (-)
XLOC_002501 CABZ01066320.2 coding downstream 142880 1541263 ~ 1544095 (-)
XLOC_002500 WDR70 coding downstream 163686 1434956 ~ 1523289 (-)
XLOC_002508 gal3st1b coding upstream 25051 1722125 ~ 1733937 (-)
XLOC_002509 epb41l4a coding upstream 48401 1745475 ~ 1827225 (-)
XLOC_002510 NA coding upstream 251023 1948097 ~ 1953459 (-)
XLOC_002511 tdgf1 coding upstream 258401 1955475 ~ 1961930 (-)
XLOC_002512 CU856539.1 coding upstream 802309 2499383 ~ 2527342 (-)
XLOC_002499 NA non-coding downstream 253835 1423241 ~ 1433140 (-)
XLOC_002495 NA non-coding downstream 1029569 657051 ~ 657406 (-)
XLOC_002518 NA non-coding upstream 1200905 2897979 ~ 2899304 (-)
XLOC_002525 NA non-coding upstream 1625063 3322137 ~ 3332362 (-)
XLOC_002529 CU571170.1 non-coding upstream 1809466 3506540 ~ 3506654 (-)
XLOC_002530 FP236598.1 non-coding upstream 2071577 3768651 ~ 3768766 (-)

Expression


Co-expression Network