G569920 (creg1)


Basic Information

Item Value
gene id G569920
gene name creg1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 5725329 ~ 5728437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU649445
GTACATACAAAATATAGCTTTATTTAGACAAATCATCCATCATTTTGTTTACAAAAATATGTACCGTGTCAGCATCAATAGAGAATAGAGGAGCATATAAATACTTATTTCACGTAGAAAATATACAAAGAATGTATTTAAATTCCAGCAAAAATCAGAAGTGATGTTGTAAAACtgaatatattttgttttaaatgCATGTCACATTTAGTTATATTTTGGCATGAtattgaattgaaatgaattaGACCCAAACTGATTAAATGAAGACTAAAAAAGGTTTACTTGTAAAATGAGAAATGGATTTGTAGATGACAAGTGCAATGCTTCATAATCAACACAtaccactaactaactaactaactataaCACACAATTTAATTCAACAAGAGCGTCATGTTTTTCCTCTGCTTTAAAGAAAtggttcacccaaattacaactTATTCTAATTTGATGGATACCTACATTAAAAAGGTATTCTATGGAGCTAGCGTCTGCCACCCagaatgtgtgtttgtttaccttGCTACAGCTTATTGGTGGCATTGTCCAAAAACAATAGAGTGGTAGTACCCTTGTTGGCATACCCCAAATGGCATTACAAACAAAAATCACCTCCATACTACTACAACATATGTCATTTGGTCAAACTACCCTTCAAGCCAGCTTCTGTCTGTACCAAGCATCACACCTCCCCCTCTTGTGGTAAAAATACAACACTGCATATGACTGCTCACATGGGAGAGATGCCATCAATTCTTTCTTATAACTACAAAAGCCAAATGAACTCCCTAACAATGAAGGCAGTCCTTCTTAAAATAATTATATTGCACAACAATAGAGCTTCCTAAAGGGTATAACCCACAATTACACACAGAGATCCATCCCTATAGCCATACATTTCAATTGGAAGCATATGAGAGAAACGCTGAATTCCAAACCATCCCCTTCCCCCACAGACACCCCAGTAGATATTACATTATTTGGAATTCAGCAAATGGCCATTATTGAGCAAATTTAGTTGGGGGAAGAAAATTTTTAAAAAGTCTTCATTATTCCAAATATTGGGTCCATCCTCCCCTGCCCTCTAGCTCACTATGAAACACTTAGGATTCCTCCTCATCAAACTGGCTGTGGTATCCTCCTAAAAGAATCACAAGACAGAAATACAACGGTCAGCTGTTCTGAAGCCACTGTAAACTAAAACAGTGACTCAGTACATTTTTGTCACGTGCACCTAGTGCTATTCATCACTTTCATTCCTGACAATAAACCATATCGACGACACATTGATCAAACTCCATGACATCTGACCAATCAGGCTCTGGTTCAGAGGTGCACTCCACAAAAGTGCATCCTAAGATTATTTGCACGAGGCAGTGAAACCCCTAGTCACTGATCCAGTGTCAgaggctaggggttgtttctggacagggcctcAGAGGCAAGAGAAAAGCATCAATAGCTACTCACTCAGTGGTGTCTCTTGTAGGGTGTAGCCTTGAAGTAGTCTTCTGGTGTGACTGTCTTTACCCCTCCAAAGTAGTCCAGAACCCACACCTTGGTGATGTTCATCTTGGCAAAGAACCAGTTGTGGTCGGTGGGCCAGTCGACCATCTCAGGGTGGCGACTGAACAGGGCTTTCTTGGCAAAGGTGGCCTCTGTACCGTTAATCTGTCAGAAACATACAGCACAGAGCCAGAGAAGATGATGTGGGCACAAAGGGGATCCTGAGGGTCGTATCCTTGGTTCTTACAGAAGTCTGTCTGGGCCAGGGACATAGACAAGGAAGCCTGGGGGTCACCTTTAAATCCTGGACAGAGATCTCCATAGTGGTGAGGTACATGTAGGGCACCCCAGTCCCAGACCCAACTGGTCCGTCACTGGTAGAGAACGCATTGGAGAAGGGTTGTCCTTGCACTGGCTCATGGGTCGATATTGTGGCCATGGAAGCCCAGTTGCACTGGTTGGCGACGAATCTAGCCATCCTGGCGACTTCCTCGTGCGGAGGGATTCTGTAAAGTTCTCCGGGCATAGCGAAAAGCAGTAGAAGCCCTGCTGCCAGCAATGTGTTCATGTTGACTTCCATCTCCTCCATAAACCACTGAGGTATAAGAACGTCGTAAACACAAGTAGAAAGAAAGGAACGAGGAGTGTTTTGTACGCTGCGGTCA

Function

symbol description
creg1 Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in blood. Orthologous to human CREG1 (cellular repressor of E1A stimulated genes 1).

NR:

description
protein CREG1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU649445 True 2175 lncRNA 0.42 3 5725329 5728437
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110513828 LOC106574713 coding upstream 14469 5700448 ~ 5710860 (+)
LOC110495514 dusp27 coding upstream 25548 5685472 ~ 5699781 (+)
LOC118965336 LOC106575727 coding upstream 49796 5642939 ~ 5675533 (+)
LOC110495508 dylt3 coding upstream 151344 5570280 ~ 5573985 (+)
LOC110497009 LOC106574645 coding upstream 155221 5553975 ~ 5570108 (+)
LOC118965219 LOC106574652 coding downstream 8279 5736716 ~ 5742783 (+)
f7l LOC106574661 coding downstream 17250 5745687 ~ 5748743 (+)
LOC110495519 LOC106575728 coding downstream 20415 5748852 ~ 5758837 (+)
LOC118965220 LOC106575751 coding downstream 34423 5762860 ~ 5766564 (+)
LOC110497014 LOC106575751 coding downstream 43737 5771961 ~ 5775857 (+)
G569909 NA non-coding upstream 179878 5544855 ~ 5545451 (+)
G569896 NA non-coding upstream 216056 5509054 ~ 5509273 (+)
G569890 NA non-coding upstream 219961 5505128 ~ 5505368 (+)
G569883 NA non-coding upstream 223823 5500928 ~ 5501506 (+)
G569882 NA non-coding upstream 224550 5500526 ~ 5500779 (+)
G569997 NA non-coding downstream 95960 5824397 ~ 5824674 (+)
G570006 NA non-coding downstream 110512 5838949 ~ 5839226 (+)
G570030 NA non-coding downstream 187175 5915612 ~ 5916039 (+)
G570042 NA non-coding downstream 206196 5934633 ~ 5934956 (+)
G570044 NA non-coding downstream 207882 5936319 ~ 5936625 (+)
G569218 LOC106591403 other upstream 829257 4894068 ~ 4896072 (+)
G569207 NA other upstream 856815 4868117 ~ 4868514 (+)
LOC118965333 cfap47 other upstream 1408869 4278763 ~ 4318486 (+)
G568631 NA other upstream 2080371 3644249 ~ 3644958 (+)
G568263 NA other upstream 2325434 3398832 ~ 3406995 (+)
G569923 NA other downstream 47874 5776311 ~ 5776819 (+)
G570065 ipo5 other downstream 293695 6022132 ~ 6024311 (+)
LOC110518527 nud15 other downstream 309450 6037832 ~ 6038818 (+)
G570105 NA other downstream 416648 6145085 ~ 6147543 (+)

Expression

G569920(creg1) Expression in all Baseline Samples

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G569920(creg1) Expression in each Bioproject

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G569920(creg1) Expression in each Sample
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Co-expression Network