XLOC_025082 (znf1124)


Basic Information

Item Value
gene id XLOC_025082
gene name znf1124
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 9071806 ~ 9091825 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049610
GCGCCGCTTCCGCGCTGCGGTTCAACTGGAGGAAGaataaagtgtccaaacacagagaaaaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagattgaagaaacattcacagtcaaacaggaagatccgcAGGAACAAACAAacctaattgaagagaatgagaggaaagaggaggaacatcatgtcaaaattgaggaaaaaactcatttacagactgatggtattttgaaaaggagagacaagaattgtttcacctgcactcagtgtggaaagattttggcaagcaaaagcaaacttaagattcacatgataatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttccgccaagcatcatcacttaataaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtggaataagttttaactgctcatcataccttaaacaacacatgaggatccacactggagagaaaccattcacttgcactcagtgtgggaggagtttcaaccgctcatcacaccttaatcaccacatgaggatccacactggagagaaaccatttacttgcactcagtgtgggaagagttttaaccgctcatcaaaccttgatcaacacataaggatccacactggagagaaaccaataacgtgcactctatgtgggaagagttttcgccaatcatcatccctttctaaacacatgaggacccacactggagagaaaccatttacttgcactcagtgtgggaagagtttcagccaatcatcaaactttaatctacacatgaggatccacactggagagaaaccatttacgtgcactcagtgtgggaagagtttccgccaagcatcatcacttaataaacacatgaggacccacactggagagaaaccatttacttgcactcagtgtgggaagagtttcaaccgctcatcacaccttaatcaagacaaaaggatccacactggagagaaaccaataacgtgcactcagtgtgggaagagttttcgccaatcatcatccctttatagacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccaatcatcaaactttaatctacacatgaggatccacactggagagaaaccaataacgtgcactcagtgtgggaagatttcagccgaccatcatcccttaataaacacatgaagatccacactggtgtgagagcgTATATGTGCTTGAAGTgtaagaagacttttattacagctgaaGATTTGAAACGGCAccagagaattcacactggataAAAAAACCTACAAGTGTTCACAGTGCAGTAAGAGGTTTACTCACTCACaaaccctgaaaacacatgagaggattcacactggaggtAAACCATAGACATGATCAGTGTGTACAGAGTTTCACAAATTTGGGGAAGCTTAAGACATGGGATGGTTTCCGGTATGGCATCAACAGGTGTAGCAGAATAGAAAGAGCGCTCCCATACACACTGGTATTAATCCTTTTTT
>TCONS_00049611
cccttcgccgtggccgtcgccgtcactgacgtgcacctctcaaaaaatgtaactacacacctaattgaagagaatgagaggaaagaggaggaacatcatgtcaaaattgaggaaaaaactcatttacagactgatggtattttgaaaaggagagacaagaattgtttcacctgcactcagtgtggaaagattttggcaagcaaaagcaaacttaagattcacatgataatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttccgccaaagtttcaaccgctcatcacaccttaatcaagacaaaaggatccacactggagagaaaccaataacgtgcactcagtgtgggaagagttttcgccaatcatcatccctttatagacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccaatcatcaaactttaatctacacatgaggatccacactggagagaaaccaataacgtgcactcagtgtgggaagagttttcaccaatcatcatccctttataaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccgattatcacaccttaatcgacacatgatgatccacactggagagaaaccattcacatgcaatcagtgtgggaagagtttcagccgattaTCACACCTTATtcgacacatgatgatccacactggagagaaaccattcacatgctctcagtgtagaaagagtttcagcaTCTTATCATCGCTTTacagacacatgaggatccacactggagaaaaaccattcacatgcactcagtgtgggaaaagttttcgccaatcatcaaatcttaatctacacatgatgatccacactggagagaaaccattcaaatgcactcagtgtgggaagagtttcagccaatcatcacaccttaatcaacacatcatgatccacactggagagaaaccattcaaatgtactcagtgtgggaagagtttcatccaatcatcatcccttaatcaacacatgatgatccacactggagagaaaccattcacatgccctaagtgtgggaagagtttcaggaaATCATCgtcccttaatgaacacatgatgatccacaccggagagaaaccattaggctcgtttgaggtGCGTACAACATGA
>TCONS_00049613
agagacaagaattgtttcacctgcactcagtgtggaaagattttggcaagcaaaagcaaacttaagattcacatgataatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttccgccaagcatcatcacttaataaacacatgaggatccacactggagagaaaccattcacatgcactcattttaaccgctcatcaaaccttgatcaacacataaggatccacactggagagaaaccaataacgtgcactctatgtgggaagagttttcgccaatcatcatccctttctaaacacatgaggacccacactggagagaaaccatttacttgcactcagtgtgggaagagtttcagccaatcatcaaactttaatctacacatgaggatccacactggagagaaaccatttacgtgcactcagtgtgggaagagtttccgccaagcatcatcacttaataaacacatgaggacccacactggagagaaaccatttacttgcactcagtgtgggaagagtttcaaccgctcatcacaccttaatcaagacaaaaggatccacactggagagaaaccaataacgtgcactcagtgtgggaagagttttcgccaatcatcatccctttatagacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccaatcatcaaactttaatctacacatgaggatccacactggagagaaaccaataacgtgcactcagtgtgggaagagttttcaccaatcatcatccctttataaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccgattatcacaccttaatcgacacatgatgatccacactggagagaaaccattcacatgcaatcatttcatccaatcatcatcccttaatcaacacatgatgatccacactggagagaaaccattcacatgccctaagtgtgggaagagtttcaggaaATCATCgtcccttaatgaacacatgatgatccacaccggagagaaaccattaggctcgtttgaggtgcgcctcgccttgactgcattgtaa
>TCONS_00049612
agagacaagaattgtttcacctgcactcagtgtggaaagattttggcaagcaaaagcaaacttaagattcacatgataatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttccgccaagcatcatcacttaataaacacatgaggatccacactggagagaaaccattcacatgcactcatttcagccaatcatcaaactttaatctacacatgaggatccacactggagagaaaccatttacgtgcactcagtgtgggaagagtttccgccaagcatcatcacttaataaacacatgaggacccacactggagagaaaccatttacttgcactcagtgtgggaagagtttcaaccgctcatcacaccttaatcaagacaaaaggatccacactggagagaaaccaataacgtgcactcagtgtgggaagagttttcgccaatcatcatccctttatagacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccaatcatcaaactttaatctacacatgaggatccacactggagagaaaccaataacgtgcactcagtgtgggaagagttttcaccaatcatcatccctttataaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccgattatcacaccttaatcgacacatgatgatccacactggagagaaaccattcacatgcaatcagtgtgggaagagtttcagccgattaTCACACCTTATtcgacacatgatgatccacactggagagaaaccattcacatgctctcagtgtagaaagagtttcagcaTCTTATCATCGCTTTacagacacatgaggatccacactggagaaaaaccattcacatgcactcagtgtgggaaaagttttcgccaatcatcaaatcttaatctacacatgatgatccacactggagagaaaccattcaaatgcactcagtgtgggaagagtttcagccaatcatcacaccttaatcaacacatcatgatccacactggagagaaaccattcaaatgtactcagtgtgggaagagtttcatccaatcatcatcccttaatcaacacatgatgatccacactggagagaaaccattcacatgccctaagtgtgggaagagtttcaggaaATCATCgtcccttaatgaacacatgatgatccacaccggagagaaaccattaggctcgtttgaggtgcgcctcgccttgactgcattgtaa
>TCONS_00049614
gtgggaagagtttccgccaaaaaccattcacatgcactcaagaaaccatttacgtgcactcagtgtgggaagagtttccgccaagcatcatcacttaataaacacatgaggacccacactggagagaaaccatttacttgcactcagtgtgggaagagtttcaaccgctcatcacaccttaatcaagacaaaaggatccacactggagagaaaccaataacgtgcactcagtgtgggaagagttttcgccaatcatcatccctttatagacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccaatcatcaaactttaatctacacatgaggatccacactggagagaaaccaataacgtgcactcagtgtgggaagagttttcaccaatcatcatccctttataaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccgattatcacaccttaatcgacacatgatgatccacactggagagaaaccattcacatgcaatcagtgtgggaagagtttcagccgattaTCACACCTTATtcgacacatgatgatccacactggagagaaaccattcacatgctctcagtgtagaaagagtttcagcaTCTTATCATCGCTTTacagacacatgaggatccacactggagaaaaaccattcacatgcactcagtgtgggaaaagttttcgccaatcatcaaatcttaatctacacatgatgatccacactggagagaaaccattcaaatgcactcagtgtgggaagagtttcagccaatcatcacaccttaatcaacacatcatgatccacactggagagaaaccattcaaatgtactcagtgtgggaagagtttcatccaatcatcatcccttaatcaacacatgatgatccacactggagagaaaccattcacatgccctaagtgtgggaagagtttcaggaaATCATCgtcccttaatgaacacatgatgatccacaccggagagaaaccattaggctcgtttgaggtgcgcctcgccttgactgcattgtaa

Function

symbol description
znf1124 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-105 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDARG00000091025

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049610 False 1594 mRNA 0.43 4 9071806 9091825
TCONS_00049611 False 1215 mRNA 0.43 4 9077907 9088394
TCONS_00049613 False 1125 mRNA 0.44 3 9082255 9083907
TCONS_00049612 False 1305 mRNA 0.43 2 9082255 9083907
TCONS_00049614 True 1098 mRNA 0.44 3 9082370 9083907

Neighbor

gene id symbol gene type direction distance location
XLOC_025081 CR926128.8 coding upstream 29711 9041989 ~ 9042095 (+)
XLOC_025080 CR926128.13 coding upstream 30238 9041462 ~ 9041568 (+)
XLOC_025079 CR926128.11 coding upstream 30753 9040947 ~ 9041053 (+)
XLOC_025078 CR926128.7 coding upstream 31283 9040417 ~ 9040523 (+)
XLOC_025077 CR926128.14 coding upstream 31813 9039887 ~ 9039993 (+)
XLOC_025083 LO018550.1 coding downstream 241159 9332984 ~ 9342773 (+)
XLOC_025084 gpr139 coding downstream 288052 9379877 ~ 9422448 (+)
XLOC_025085 trap1 coding downstream 496880 9588705 ~ 9626674 (+)
XLOC_025086 NA coding downstream 631971 9723796 ~ 9725382 (+)
XLOC_025087 cbx2 coding downstream 1060267 10152092 ~ 10164759 (+)
XLOC_025429 BX649540.1 misc downstream 21156914 30248739 ~ 30249036 (+)
XLOC_025088 NA non-coding downstream 1088066 10179891 ~ 10231275 (+)
XLOC_025090 NA non-coding downstream 1654575 10746400 ~ 10749345 (+)
XLOC_025091 NA non-coding downstream 1841661 10933486 ~ 10938406 (+)
XLOC_025092 NA non-coding downstream 1851302 10943127 ~ 10994605 (+)

Expression


Co-expression Network