XLOC_025087 (cbx2)


Basic Information

Item Value
gene id XLOC_025087
gene name cbx2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10152092 ~ 10164759 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049620
TTTCCCTCTCACACACGCACTCGCAGTGACTGAGAAGGCGATGAGAATGAGATGAGAACAGCCATGGAGGAGCTGAGCGCGGTAGGAGAGCAGGTCTTCGACGCCGAGTGTATCCTCAACAAACGCACGAGGAAGGGCAAACTGGAGTATCTGGTCAAGTGGAGAGGATGGTCGTCCAAGCATAACAGTTGGGAACCTCAGGAAAACCTTCTTGACCCGAGACTATTGGTTGCATTTAACAAGAGGGAGCAGGAGAAGGAACTCTTGATAAGCAAAAAGGGGAAACGGCCTCGTGGACGACCCAGAAAAATAATGGAAACTATTCCAGTGGTGTCAAAGTCAAGCAGCTCATCCTCGTCTTCATCCTCTTCTGGTTCTTCGTCATCTTCCTCATCATCATCCTCTTCTACAGATGACGACGATGAAGACGACCACAACATGACTCCAAAGCCGATTCCTCGTCCTCGAGAGCATCTCCCGGTCCCGCAGAAGAAAGCGCAGATCGTCGTGGCCAAGCCAGGGCCGCCAAAGAAGCGAGGGAGGAAAGCGCTGCCTCCGGAGCTGAAGGCCATACGTCAAGTTAAAGGTACTCGGAAGATCCTCAAACCCATTTCCAGAGACTCGGATCTCCGAGGCATAAAGAAACCTCTCATGCCTGCAAGCTTCACCTACACCGGCTTGAATCGCACCTCAGGAAGGGAGCCGATGGCAATGCATAACCGAGGGTCTTTTACACACAAGAGTTCCTTAAGCTCCCTTGGACGCTCCATCGGATCCGTTTCATCTTCTCCAACACTAAATCGGTCGCCGCAAACTAAATCTGCTTCAGATTTCAAGCTCTCCGTCTCAGATATGAACAGCGGACTTGATCCCAAGACTCCCACGTGCAAATCTCCAGGTGTAGCCGCACTGAATCTGCACAGCAGCAATGGACAGACGTGTCCACAACTCTCTCCCACTGTGCCGAAAGATCAGACCCTGCTTCAAAGGTCAGCATCTCTCCCGAAATCCCCATCAAGCTCATTTTCATCTCTCAAAACTCCTTCCAGCCTTCAAGCTCTCAATCTGCAGAGCGTCAACAAAACAGTGCAGGGAAACGGGACTGATTTGAAGACTTCCCCGCATTCTGGAAGGAAAAGTTCTGGATTTAACACAAGTTCTGCACCAAACACTCCTAGCAAGTTCCAGACCTCACAGCAAGCCTTAAAGAGTCCACAGAAATTGAAAGCGGATGATTTGGCTGAAAGACTTGGGAAGAAAAGCCAAGCTAGAACAGAAAAGATTCTGCCAACAGAGGGTCGAGATTCTCAACCGGCGCAAGACAGACCCTCGTCTAAAGATCCCAGCAAACAGAGCAAGACCTTGAGCGAATTGAGCACCGGAGAGGAGGGAAGCAGCTCCGATACCGACCATGATTCCTCATTTCCCAGGGACAGCCATGACTTGTCCATCTCTGTGCAAGCAGGTCAGGATTGGAGGCCGACACGGAGCCTGATTGAGCATGTGTTTGTCACTGACGTCACTGCAAACCTGGTCACAGTAACAGTGAAGGAATCTCCAACCAGCGTTGGGTTTTTTAGCATTCGGAATTATTGAATGTCTTCAACTGGAAGTGCAGCTACATTTGGATAATCGGGAcaagtttcaagcaagctgtttGATGGGTCTCCATTTTTTAATGgattttacttgtttttactcAAAGTTGGGACTGTTTTACCTGGTCAGATTTGAAGTTCCTTGACACGTTTTTAATCAGACATGTACAATCTCGCCTAATTTGAAGTCTAAAGTGTATTTCTGAAGCGTTCGCCTTGGTTTCAAATGCAGGGATGGTTTTCTTGAAGTTGATTCTGAGTACAGTACTAGTAAAGACAAAATTCACAAGATCAAAACAAATATATCCAAAgttttttttagctgaatctcAGATTGTGTCTTTTAAAAAGGTGCCTATTTTTAAGCTGTCGTTTTTCTGCTCAATAACCAATATAATGagggtttttttctttttgttttactatGATGTGGGTATATTTTGTACTACACAACAgttcactgtttatttattatttcttactGTTATTTTTGTTGGTAGGTGACATGCTGAAACACACAGTAAAGATTCTTTTTATACAAAA
>TCONS_00049621
ATGAGATGAGAACAGCCATGGAGGAGCTGAGCGCGGTAGGAGAGCAGGTCTTCGACGCCGAGTGTATCCTCAACAAACGCACGAGGAAGGCATAACAGTTGGGAACCTCAGGAAAACCTTCTTGACCCGAGACTATTGGTTGCATTTAACAAGAGGGAGCAGGAGAAGGAACTCTTGATAAGCAAAAAGGGGAAACGGCCTCGTGGACGACCCAGAAAAATAATGGAAACTATTCCAGTGGTGTCAAAGTCAAGCAGCTCATCCTCGTCTTCATCCTCTTCTGGTTCTTCGTCATCTTCCTCATCATCATCCTCTTCTACAGATGACGACGATGAAGACGACCACAACATGACTCCAAAGCCGATTCCTCGTCCTCGAGAGCATCTCCCGGTCCCGCAGAAGAAAGCGCAGATCGTCGTGGCCAAGCCAGGGCCGCCAAAGAAGCGAGGGAGGAAAGCGCTGCCTCCGGAGCTGAAGGCCATACGTCAAGTTAAAGGTACTCGGAAGATCCTCAAACCCATTTCCAGAGACTCGGATCTCCGAGGCATAAAGAAACCTCTCATGCCTGCAAGCTTCACCTACACCGGCTTGAATCGCACCTCAGGAAGGGAGCCGATGGCAATGCATAACCGAGGGTCTTTTACACACAAGAGTTCCTTAAGCTCCCTTGGACGCTCCATCGGATCCGTTTCATCTTCTCCAACACTAAATCGGTCGCCGCAAACTAAATCTGCTTCAGATTTCAAGCTCTCCGTCTCAGATATGAACAGCGGACTTGATCCCAAGACTCCCACGTGCAAATCTCCAGGTGTAGCCGCACTGAATCTGCACAGCAGCAATGGACAGACGTGTC

Function

symbol description
cbx2 Predicted to enable methylated histone binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Predicted to be active in heterochromatin. Is expressed in several structures, including digestive system; heart; nervous system; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in 46,XY sex reversal 5. Orthologous to human CBX2 (chromobox 2).

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0000792 heterochromatin cellular_component
GO:0035102 PRC1 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0035064 methylated histone binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-5502 Predicted to enable methylated histone binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Predicted to be active in heterochromatin. Is expressed in several structures, including digestive system; heart; nervous system; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in 46,XY sex reversal 5. Orthologous to human CBX2 (chromobox 2).

Ensembl:

ensembl_id ENSDARG00000044938

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049620 False 2141 mRNA 0.46 5 10152092 10164759
TCONS_00049621 True 853 processed_transcript 0.52 4 10152138 10163561

Neighbor

gene id symbol gene type direction distance location
XLOC_025086 NA coding upstream 426710 9723796 ~ 9725382 (+)
XLOC_025085 trap1 coding upstream 525418 9588705 ~ 9626674 (+)
XLOC_025084 gpr139 coding upstream 729644 9379877 ~ 9422448 (+)
XLOC_025083 LO018550.1 coding upstream 809319 9332984 ~ 9342773 (+)
XLOC_025082 znf1124 coding upstream 1060267 9071806 ~ 9091825 (+)
XLOC_025088 NA coding downstream 15132 10179891 ~ 10231275 (+)
XLOC_025089 tmem220 coding downstream 472571 10637330 ~ 10641880 (+)
XLOC_025090 NA coding downstream 581641 10746400 ~ 10749345 (+)
XLOC_025091 NA coding downstream 768727 10933486 ~ 10938406 (+)
XLOC_025092 NA coding downstream 778368 10943127 ~ 10994605 (+)
XLOC_025429 BX649540.1 misc downstream 20083980 30248739 ~ 30249036 (+)
XLOC_025081 CR926128.8 non-coding upstream 1109997 9041989 ~ 9042095 (+)
XLOC_025080 CR926128.13 non-coding upstream 1110524 9041462 ~ 9041568 (+)
XLOC_025079 CR926128.11 non-coding upstream 1111039 9040947 ~ 9041053 (+)
XLOC_025078 CR926128.7 non-coding upstream 1111569 9040417 ~ 9040523 (+)
XLOC_025093 NA non-coding downstream 789048 10953807 ~ 10999810 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000173_00111371_00114317 CBX2 coding CI01000173 null 111371 ~ 114714 (+)