XLOC_025089 (tmem220)


Basic Information

Item Value
gene id XLOC_025089
gene name tmem220
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10637330 ~ 10641880 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049622
GTCATACCCGGAAAACAGTACAGTTATAAAGTCCAGAGGGTCCAGTTGAGAGAGATGAGAATAAACCCAGTtgaataaatgcacaaaaatcACAAACGATGAACAAGAACGGCGTCTCGGTCTTTCAGACCATCTGGAGAGTTTGTAATCTATTCATGTCAGTGTTTTTCTCGCTGGCGACTTACGTGCAGataaatgaTCCGGATGCTGCTCTTTGGATGGTTGGCTATGCTATTCCAGCTGTATTGTGCTTTTTGATTTTCTGTCAACAACAAATAACAGAATCGTTATTGTGGAGGAGAATCGCTGATCTGCATGTTCTTGTGGCCTCGACGTTTGGGGTCATTCTGGCCTGGAAACTTTATAAAGAGGGAATTACAGACATTTTCCAGCAAGAGGAAGGAAGGGAATGCTGTGGACTCCTGCTGACTGTTTTCTGGCTGCTGTTATGCAGACATTCAGGACGgagctCTACTATCGGCTCTGTGAGGATCTTCACTGCTGTGGGAATCAGTGTGTTCCCCTTCGTCACGTGGCTCTATTACTACATGAACAAAGAGCTGAGGAAACACTGGCCTGAACACTGCACCACTGCTCTCTGATCAGCTCAACAAATGAAGTCTGAGCTCTCCATCAGCACTTAAACTTAACAGAAGTTCAATCCTGTCTTAGTGGACTGATAATACAAGACAATCAGCAGATGTTGAACTTAATGAAATATTTAGGAATGCAAACATGACACTTTAAAGCCAGCGCAGACGTGATCACGCTGTTATCGCCTGAAACAAACAATGTAAACATGTACAATGTATTTGTCCATTCAAAAATGTTATAATGAA

Function

symbol description
tmem220 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM220 (transmembrane protein 220).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-194 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM220 (transmembrane protein 220).

Ensembl:

ensembl_id ENSDARG00000088981

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049622 True 839 mRNA 0.43 6 10637330 10641880

Neighbor

gene id symbol gene type direction distance location
XLOC_025088 NA coding upstream 406055 10179891 ~ 10231275 (+)
XLOC_025087 cbx2 coding upstream 472571 10152092 ~ 10164759 (+)
XLOC_025086 NA coding upstream 911948 9723796 ~ 9725382 (+)
XLOC_025085 trap1 coding upstream 1010656 9588705 ~ 9626674 (+)
XLOC_025084 gpr139 coding upstream 1214882 9379877 ~ 9422448 (+)
XLOC_025090 NA coding downstream 104520 10746400 ~ 10749345 (+)
XLOC_025091 NA coding downstream 291606 10933486 ~ 10938406 (+)
XLOC_025092 NA coding downstream 301247 10943127 ~ 10994605 (+)
XLOC_025093 NA coding downstream 311927 10953807 ~ 10999810 (+)
XLOC_025094 NA coding downstream 349160 10991040 ~ 11056923 (+)
XLOC_025429 BX649540.1 misc downstream 19606859 30248739 ~ 30249036 (+)
XLOC_025081 CR926128.8 non-coding upstream 1595235 9041989 ~ 9042095 (+)
XLOC_025080 CR926128.13 non-coding upstream 1595762 9041462 ~ 9041568 (+)
XLOC_025079 CR926128.11 non-coding upstream 1596277 9040947 ~ 9041053 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location