G570396


Basic Information

Item Value
gene id G570396
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 6903701 ~ 6906171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU650039
TGTCTGTCCTAATCACGTAGCGATGGttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatgggtatatcatgtactgtaggtcaggatgTCTGTCCTAATCACATAGCGATGGttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtccaaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcagggtgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtcctaatcacatagcgatggttatatcatgtactgtaggtcaggatgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcagggtgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtcctaatcacgtagcgatggttatatcatgtac
>TU650040
GTCTGTCCTAATCACGTAGCGATGGttatatcatgtactgtaggtcaggatgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcagggtgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgTCTGTCCTAATCACATAGCGATGGttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtcctacTCACGTAGCGATG
>TU650041
GTCTGTCCTAATCACGTAGCGATGGttatatcatgtactgtaggtcaggatgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcagggtgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgTCTGTCCTAATCACATAGCGATGGttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtccaaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcagggtgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtcctaatcacatagcgatggttatatcatgtactgtaggtcaggatgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcagggtgtctgtcctaatcacgtagcgatggttatatcatgtactgtaggtcaggatgtctgtcctaatcacgtagcgatggttatatcatgtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU650039 False 836 lncRNA 0.43 3 6903701 6906130
TU650040 False 397 lncRNA 0.44 3 6904397 6906171
TU650041 True 886 lncRNA 0.43 3 6904397 6906130
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497053 LOC106574838 coding upstream 2760 6890359 ~ 6900941 (+)
LOC110495624 NA coding upstream 60900 6839599 ~ 6842801 (+)
rgn rgn coding upstream 64196 6834625 ~ 6839505 (+)
LOC110495616 LOC106574734 coding upstream 69400 6805822 ~ 6834301 (+)
LOC110518089 LOC106593800 coding upstream 102239 6773698 ~ 6801462 (+)
LOC110495628 LOC106574809 coding downstream 26385 6932556 ~ 6934438 (+)
LOC110527298 LOC106575763 coding downstream 28820 6934991 ~ 7187423 (+)
trnaa-ugc-20 NA coding downstream 187753 7093924 ~ 7093995 (+)
LOC110528851 LOC106575914 coding downstream 377269 7283440 ~ 7286709 (+)
LOC110528837 chsta coding downstream 382747 7288918 ~ 7293507 (+)
G570383 NA non-coding upstream 39934 6856289 ~ 6863767 (+)
G570378 NA non-coding upstream 51463 6850484 ~ 6852238 (+)
G570377 NA non-coding upstream 53710 6849720 ~ 6849991 (+)
G570376 NA non-coding upstream 55031 6848310 ~ 6848670 (+)
G570375 NA non-coding upstream 73847 6828959 ~ 6829854 (+)
G570382 LOC106575786 non-coding downstream 2468 6908639 ~ 6915251 (+)
G570421 NA non-coding downstream 85147 6991318 ~ 6991947 (+)
G570425 NA non-coding downstream 91329 6997500 ~ 6997913 (+)
G570435 NA non-coding downstream 110643 7016814 ~ 7017437 (+)
G570439 NA non-coding downstream 120345 7026516 ~ 7030607 (+)
LOC110528754 LOC106575679 other upstream 137555 6761084 ~ 6767166 (+)
LOC118965228 LOC106575690 other upstream 370154 6531104 ~ 6533547 (+)
G570182 NA other upstream 451387 6450210 ~ 6452314 (+)
G570118 NA other upstream 735581 6167351 ~ 6168120 (+)
G570541 NA other downstream 398791 7304962 ~ 7306651 (+)
G570601 LOC100846954 other downstream 532388 7438559 ~ 7440748 (+)
G570616 NA other downstream 581034 7487205 ~ 7487598 (+)
LOC118965232 LOC106575843 other downstream 916942 7822703 ~ 7827097 (+)
LOC110495467 LOC100653484 other downstream 1023617 7900629 ~ 7934716 (+)

Expression

G570396 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G570396 Expression in each Bioproject

Bar chart with 16 bars.
G570396 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network