XLOC_025090


Basic Information

Item Value
gene id XLOC_025090
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10746400 ~ 10749345 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052597
TGAGTCCTATCAACTGCAACAAATGAGTGAAACTCTTTAGATGCTGATCACGGTTTCTCtcgtgtgaatcctctcatgttttTTTCCGGATATGTAGCTGATTGAACACTTGAaaagtttctctccagtgtgaatcttctGATGTTTTCTTAAACTTAACCGTGTTGAAAAACTTTTTCCACACACAGGACATGAataaggcttctcctttgtatgaGCTCTAAGATGGATCTTCAGATTTGTGGctcttaaaaatgttttgctgcattgatcacatttgtgtgatttttctccagtgtggatcaacatgtgtttattaaggcTTGATGACCCTCtgaaattcttcccacactgagaacatgtgtacggtttctctccagtgtgaatctgcTCATGTTTTTTAAGATTTCCTAactgactgaatctcttgtcgcagtgtgaacacttgtaaggtttctctccagtgtgaatcctctggtgcagTTTCAAATGTTGAGcactaataaaagtcttctcacactcaaagcacatatactctttcacaccagtgtgaatCTTCTGATGTACTCTTAAATATGACTGCCTtgaaaaactctttccacacacagAACATGAATAAGGCTTCTCCTTCGTATGAACTCTAAGATGGATCTTCAGATATACAGGTTTCAAAAATGATTTAccgcattgatcacatttgtgtgttttctttccagtgtggatcaacATGTGTTGATGAAGGCTTGATGAGTATccgaaactcctcccacactgagtacatgtgtacggtttctctccagtgtgaataaTCATGTGTTGAGTAAGGGATGATGATtgtgtgaagctctttccacactgagtacatgtgtacggtttctctccagtgtgaatcctctgatgGACCTTCAGATCTGCAGCTGTCAAAAATGGTTTAccgcattgatcacatttgtgtgttttctctccactgtggagcttcatgtgttgattaagacTTGATAATCCTCtgaaattcttcccacactgagtacatgtgtatggtttctctccagtgtgaatcctcttatGTAAATTCAAGTTTCCTAGCCGattgaatctcttgtcgcagtgtgaacacttgtagggcttctctccagtgtgaatcctctcatgtacTTTCAGAGTTGATAactgactgaatctcttgtcacagtgtgaacaattgaacggtttctctccagtgtgaatcctctcatgtattTTCAGGACTGATAAatgactgaatctcttgtcgcagtgtgaacacttgtaaggtttctctccggtgtgaatcctctcatgtcttTTCAGAATTGATAactgactgaatctcttgtcgcagtgtgaacacttgtaaggtttctctccagtgtgaatcctctcatgtgtttccAGGCATCTTACATAAcagaatctcttgtcgcagtgtgaacacttgtaaggtttctctccagtgtgaatgcTCTCATGTCTTTTCAGAATTGATAACTGAcagaatctcttgtcgcagtgtgaacactggtaaggtttctctccagtgtgtacaGTCTGGTGCCTTTTCAAATGATCAGCTCTAGTAAAAGTCTTCTCACAATCCAAGCACATATACTTTTTCTCACCACTGTGGATCTTCTTATGTTTTACTAAACTTGACTGCATTTCAAAACTTATTTCACACACAGAACATGAAAGAGGCTTCTCTTTTGTATGAGCCCTAAGATGTGTCTTCAGCTGTAAAgccctcaaaaatgttttgccacattgatcacgtgtgtgtgttttatctccACTGTGGATCTGAGGatccaaaactcttcccacactgagtatgtgtac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052597 True 1854 lncRNA 0.40 2 10746400 10749345

Neighbor

gene id symbol gene type direction distance location
XLOC_025089 tmem220 coding upstream 104520 10637330 ~ 10641880 (+)
XLOC_025088 NA coding upstream 515125 10179891 ~ 10231275 (+)
XLOC_025087 cbx2 coding upstream 581641 10152092 ~ 10164759 (+)
XLOC_025086 NA coding upstream 1021018 9723796 ~ 9725382 (+)
XLOC_025085 trap1 coding upstream 1119726 9588705 ~ 9626674 (+)
XLOC_025091 NA coding downstream 184141 10933486 ~ 10938406 (+)
XLOC_025092 NA coding downstream 193782 10943127 ~ 10994605 (+)
XLOC_025093 NA coding downstream 204462 10953807 ~ 10999810 (+)
XLOC_025094 NA coding downstream 241695 10991040 ~ 11056923 (+)
XLOC_025095 mrps7 coding downstream 323613 11072958 ~ 11075476 (+)
XLOC_025429 BX649540.1 misc downstream 19499394 30248739 ~ 30249036 (+)
XLOC_025081 CR926128.8 non-coding upstream 1704305 9041989 ~ 9042095 (+)
XLOC_025080 CR926128.13 non-coding upstream 1704832 9041462 ~ 9041568 (+)
XLOC_025079 CR926128.11 non-coding upstream 1705347 9040947 ~ 9041053 (+)
XLOC_025097 NA non-coding downstream 439078 11188423 ~ 11198265 (+)

Expression


Co-expression Network