XLOC_025092


Basic Information

Item Value
gene id XLOC_025092
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10943127 ~ 10994605 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052600
ctttattttcttatttaaagtctTCATTTCTATACAGTCAACATACTGAACTGCACTTACATGAACTTAGtcaaaacactttacaaaaccgatgcttatttgaaatattatacaCATATACTGCTGTTGCACAGATTTACATTTGGCAGTCAGTTCTGATAAACTTCACCGTCATCATCAGAATCAGACAAACATAAACAATGCCTGATTTTGATGCAATATCCACAAATACttataaaacacatttcaaaatattttcaaaaatatttattcattatctaATAAACTCAAAGATGAATACATCACCATTtacataaaactgtaaataacAGACAGTACAGGaacaatcattttaaataaacaaagcaattaGTTCTGCTTTATATACCAATAaagaaatcaaaataaacaatacagtTTGATCAGGTCTGGcgtgagagcaaaaaaaaaaaaatctgagagaGAGTTGACGTACTCTTGAAGACAGGAGTTGATCAGATCCTGAGACAgtgttaattttaattattatagacAAAAATTACTGCATAGACAACAATAATCTGCCACAGTCAAAATCTTTAACTTTTCCATCATTTAACAGAACAGAAAACCCGATGGACAAATATTCAATCAAAATTACACAAacatgtgtaaacataaacataaacataaacatgaaCAAAATAGTTACTGACCAATGCTGTAGAGGTCTCAAACATGGACAAAAAGATCCCTCATTTTATCTAATACAcagttaaaaatgaataaattgacagaaacagttttaaaaatgtaccaCAATTGATTTATATGTTAATCTGGAGAAGCAGAATCAAGTGCAGACAGAAACTCCATTTCATAATTCGGTTGTTCTCTgtgtacaaaacaaaacattgttattatGTCATCAGCACATCTGTACTCACATCACTCCACACTAAGATGACAAACCCTTACTGCATACTGCAGATCAGCTGATA
>TCONS_00052601
ttcttatttaaagtctTCATTTCTATACAGTCAACATACTGAACTGCACTTACATGAACTTAGtcaaaacactttacaaaaccgatgcttatttgaaatattatacaCATATACTGCTGTTGCACAGATTTACATTTGGCAGTCAGTTCTGATAAACTTCACCGTCATCATCAGAATCAGACAAACATAAACAATGCCTGATGTTTGATGCAATATCCACAAATACTtacaaaacacatttcaaaatattttcaaaaatgtacatttattatcTAATAAAACTCAAAGATGAATATATAACCATTTACATAAAACTGTAAATGGCAGACGGTacaaaaacaatcattttaaataaacaataaatcaattAGTTCTGCTTCATATACCAATAAAGTATTAAGTGCCCAACTGATTCTgttttctctcaaggttttttcctttacTCTTCTAATGGTGacgttttttttccctctccgctgtcgccactggcttgcatggttcaggatctgtagagctacgcatcgatgaatttgctcttcagtgtttggactctcagtaatgattttaaaccacactgaactgagctaaactgaactgaacttaaacactaaaaactgaactaccctgatccagttactatgaccatttatgtgaagctgctttgacacaatctacattgtaaaagcgctgtacaaataaagctgaattaaaattgaattgaataaagaaaaaaaaataaacacaatatacaGTTTGCTGAGACAGtgttaatttgaaatattatacACAAAAAATTACTGCATAGACAACAAAAATCTGCCACAGTCAAAATCTTTAACTTTTCCATCATTTGACAGAACAGAAAACCCGATGGACAAATATTCAATCAAAGTCAAAGACACAAATAGAACAAAATAGTAACTGACCAATGCTGTAGTCTCAAACATGGACAAAAAGATCCCTCATTTTATCTAATACAcagttaaaaatgaataaattgacagaaacagttttaaaaatgtaccaCAATTGATTTATATGTTAATCTGGAGAAGCAGAATCAAGTGCAGACAGAAACTCCATTTCATAATTCGGTTGTTCTCTgtgtacaaaacaaaacattgttattatGTCATCAGCACATCTGTACTCACATCACTCCACACTAAGATGACAAACCCTTACTGCATACTGCAGATCAGCTGATA
>TCONS_00052602
TTTCTATACAGTCAACATACTGAACTGCACTTACATGAACTTAGtcaaaacactttacaaaaccgatgcttatttgaaatattatacaCATATACTGCTGTTGCACAGATTTACATTTGGCAGTCAGTTCTGATAAACTTCACCGTCATCATCAGAATCAGACAAACATAAACAATGCCTGATGTTTGATGCAATATCCACAAATACTtacaaaacacatttcaaaatattttcaaaaatgtacatttattatcTAATAAAACTCAAAGATGAATATATAACCATTTACATAAAACTGTAAATGGCAGACGGTacaaaaacaatcattttaaataaacaataaatcaattAGTTCTGCTTCATATACCAATAAAGTATTAAGTGCCCAACTGATTCTgttttctctcaaggttttttcctttacTCTTCTAATGGTGacgttttttttccctctccgctgtcgccactggcttgcatggttcaggatctgtagagctacgcatcgatgaatttgctcttcagtgtttggactctcagtaatgattttaaaccacactgaactgagctaaactgaactgaacttaaacactaaaaactgaactaccctgatccagttactatgaccatttatgtgaagctgctttgacacaatctacattgtaaaagcgctgtacaaataaagctgaattaaaattgaattgaataaagaaaaaaaaataaacacaatatacaGTTTGCTGAGACAGtgttaatttgaaatattatacACAAAAAATTACTGCATAGACAACAAAAATCTGCCACAGTCAAAATCTTTAACTTTTCCATCATTTGACAGAACAGAAAACCCGATGGACAAATATTCAATCAAAGTCAAAGACACAAATAGAACAAAATAGTAACTGACCAATGCTGTAGTCTCAAACATGGACAAAAAGATCCCTCATTTTATCTAATACACAGTTAAAGATGAATAAATTAACAGacacagttttaaaaatgtaccaCAATTGATTTATATGTCAATCTGGAGAAGCAGAATCAAGTGCAGACAGAATCTCCATTTCACAATTCGGTTGTTCTCTgtgtacaaaacaaaacattgttattatGTCATCAGCACATCTGTACTCACATCACTCCACACTAAGATGACAAACCCTTACTGCATACTGCAGATCAGCTGATAcataagatataatatattaccATGAGTTGAAGTCTTTCAGCGTTGTTCCTTAGACTATCTGCAGATCTGtattacaaaacaaaactacGGATTGAACAATGAAACAGAAACAGCTGAGTGTGTGTTATACGCATTTATACTACAGGACAGTTgaattgattctgattggctgttgagcATTCTAAGATGTCATTATTTTCTTAACATAAACACACAGcaaaagtagttccggcaggttttgagcggATTACAGCTCTATTTCACTACGCTAAATGATTTCAGTTATTGCACAGATACAACAGACAAAAATCACAGCTAAACTCAACAGAAAGCTTTGGGTGAGATGTGTGAgaaactagtgctacacacagaagcagtttgaggacaaaaaccggACAAATGTAAAAACACTGCACATCCCATACTTGTCTCAGTTTTCCATCAATTCAACAACCTGTTTTCAGTTACTCCATATGTATATAATTATACCATGAGAgctgtaattaataaaaatctGAACTTACCCTGATGTAAGAACCTTCACTATGTGATAGAAGAAAATAGAGACAAAATAGTTAATAAAGTTCAAATTAATCAACAACTGATCAGaagtttaaatgcatatt
>TCONS_00052603
TGCACTTACATGAACTTAGtcaaaacactttacaaaaccgatgcttatttgaaatattatacaCATATACTGCTGTTGCACAGATTTACATTTGGCAGTCAGTTCTGATAAACTTCACCGTCATCATCAGAATCAGACAAACATAAACAATGCCTGATGTTTGATGCAATATCCACAAATACTtacaaaacacatttcaaaatattttcaaaaatgtacatttattatcTAATAAAACTCAAAGATGAATATATCACCATTtacataaaactgtaaataacAGACAGTACAGGaacaatcattttaaataaacaaagcaattaGTTCTGCTTTATATACCAATAaagaaatcaaaataaacaatacagtTTGATCAGGTCTGGcgtgagagcaaaaaaaaaaaaatctgagagaGAGTTGACGTACTCTTGAAGACAGGAGTTGATCAGATCCTGAGACAgtgttaattttaattattatagacAAAAATTACTGCATAGACAACAATAATCTGCCACAGTCAAAATCTTTAACTTTTCCATCATTTAACAGAACAGAAAACCCGATGGACAAATATTCAATCAAAATTACACAAacatgtgtaaacataaacataaacataaacatgaaCAAAATAGTTACTGACCAATGCTGTAGAGGTCTCAAACATGGACAAAAAGATCCCTCATTTTATCTAATACAcagttaaaaatgaataaattgacagaaacagttttaaaaatgtaccaCAATTGATTTATATGTTAATCTGGAGAAGCAGAATCAAGTGCAGACAGAAACTCCATTTCATAATTCGGTTGTTCTCTgtgtacaaaacaaaacattgttattatGTCATCAGCACATCTGTACTCACATCACTCCACACTAAGATGACAAACCCTTACTGCATACTGCAGATCAGCTGATA
>TCONS_00052604
GACCAATGCTGTAGTCTCAAACATGGACAAAAAGATCCCTCATTTTATCTAATACAcagttaaaaatgaataaattgacagaaacagttttaaaaatgtaccaCAATTGATTTATATGTTAATCTGGAGAAGCAGAATCAAGTGCAGACAGAAACTCCATTTCATAATTCGGTTGTTCTCTgtgtacaaaacaaaacattgttattatGTCATCAGCACATCTGTACTCACATCACTCCACACTAAGATGACAAACCCTTACTGCATACTGCAGATCAGCTGATA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0072698 protein localization to microtubule cytoskeleton biological_process
GO:0007049 cell cycle biological_process
GO:0044380 protein localization to cytoskeleton biological_process
GO:0072686 mitotic spindle cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0005813 centrosome cellular_component
GO:0005814 centriole cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052600 False 980 lncRNA 0.31 2 10943127 10993976
TCONS_00052601 False 1208 lncRNA 0.32 2 10943134 10993976
TCONS_00052602 False 1815 lncRNA 0.33 2 10943153 10994605
TCONS_00052603 False 931 lncRNA 0.31 2 10943178 10993976
TCONS_00052604 True 285 lncRNA 0.34 2 10944057 10993976

Neighbor

gene id symbol gene type direction distance location
XLOC_025091 NA coding upstream 4721 10933486 ~ 10938406 (+)
XLOC_025090 NA coding upstream 193782 10746400 ~ 10749345 (+)
XLOC_025089 tmem220 coding upstream 301247 10637330 ~ 10641880 (+)
XLOC_025088 NA coding upstream 711852 10179891 ~ 10231275 (+)
XLOC_025087 cbx2 coding upstream 778368 10152092 ~ 10164759 (+)
XLOC_025095 mrps7 coding downstream 78353 11072958 ~ 11075476 (+)
XLOC_025096 sstr5 coding downstream 106980 11101585 ~ 11122914 (+)
XLOC_025097 NA coding downstream 193818 11188423 ~ 11198265 (+)
XLOC_025098 NA coding downstream 331557 11326162 ~ 11333666 (+)
XLOC_025099 NA coding downstream 392333 11386938 ~ 11388541 (+)
XLOC_025429 BX649540.1 misc downstream 19254134 30248739 ~ 30249036 (+)
XLOC_025086 NA non-coding upstream 1217745 9723796 ~ 9725382 (+)
XLOC_025081 CR926128.8 non-coding upstream 1901032 9041989 ~ 9042095 (+)
XLOC_025102 NA non-coding downstream 582070 11576675 ~ 11580720 (+)
XLOC_025103 NA non-coding downstream 860715 11855320 ~ 11858803 (+)

Expression


Co-expression Network