G570601 (LOC100846954)


Basic Information

Item Value
gene id G570601
gene name LOC100846954
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7438559 ~ 7440748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU650345
TAGCTCCTCTCTGCCTTTTTGTACTAGTGTTGAATAGTGAATCAGAGCAGGGAATGAAGCGCAGCAGAGATTAAGATGAGTAGTGGGGTTAAACCAAGGTCGAGGCTGGGATGCTGAGAAGGCCTTGAAACACACACAACTGGAATGATAGGAATGTACATTTTTCATTCAAGTGAGTACTGTCAAGTGGTTGATAAATTCTCCATGCTCGCTAAGCCTTACACATTTAACAATTCATATTTTAGTAgtttagcagactcttatccagagcgacttacaggcaCAATTAGGGGGTTAgattcgaaccagcgacctttcgattactggcccaacgctcttaaccactaggctacctgccaccattATAAAATATAATCATTCAAGCGAGTGTCAAATGGCTGTGATATGAGgggcttcccccccccccccattctagTTATTGTATTTCTATGCTTGTCTTACAACAAGTCTTCCAAAGGGAGTTATTTCATGTGGTACAATAAAGGCAATGATTGATGTGAAGGTGTGGAAGATGAGACAGGCTTTCTATTGGATGTGTTCTCTTCCCCCAACATAAAGCAGATCTATATTGGACTCTCAGTATTCACTCCTCTGTAGGTCCATGTACTGTTAGTGTTTGTTTAGTCACATCATTGTAATGTCAAAATGATGTATGATTTTCAGGTgtttaaagatgaaataaaacaatgttaATCGGTGTGATGTAATTGCCGAGGTGATTATCGTACGTAGAGGAGGAAGGTTTATCACTCTGTGCAGCACAGGGTTTTAGCTGAGCTGTTATTTGAAATGAAAACGGTGCTCTCGTAGTAAATcggatgttttttttaaatgaggtcGGTCGGCATGTACTTGGTTTCACAAACTAAACATGTAAAACCCTTAAATATGTTTTCATTAACTTCAAACCAAGTGTGCGATTGTGAGGATAATTAGATGCTGTGAGGGGggagtatttgatcccctgctgattttgtacgtttgcccactgatcAAAAAATGATCAGtctaattttaatggtaggtttatttgaacagtgagagacagaataacaacataaaaatccagaaaaacgcatgtcaaaattgttttaaattgatttgcattttaatgagggaaataagtatttgatcagaAAGATTTCaggaagatttctggctcccaggtgtcttttatacaggtaaagagctgagattaggagcacactcttaggGAGTGCACCTAATCTCAGTTtcttacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctctccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggccaCAAGatcatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcgcaaatggaataaacacaaaagaactgtcattctccctcggcctggggctccatgcaagatctcaccttgtgcagttgcaatgatcatgagaccgatgaggaatcagcccagaactacacaggaggatcttgtcaatgatctcaagacAGCTGGGATCATGGTCGCCAAGAAAACCattggtaacacactatgccgtgaaggactgaaatcctgcagcgcctgcaaggtccccctgctcaagaaagcacatatacaggcccgtctgaagtttgccaatgaacatctgaatgattcagaggacaactgggtgaaagtgttgtggtcagatgagaccaaaatggagctctttggcatcaactcaactcgccgtgtttggaggaggaatgctgcctgtgaccccaagaacaccatccccaccgtcaaacatggaggtggaaacattatgctttggaggtgtttttctgctaaggggacaggacaacttcaccgcatcaaagggacgatggacggggccatgtaccgtcaaatcttgggtgagaacctccttcactcagccagggcattgaaaatgagtcgtggatgggtattccagcatgacaatgacccaaaacacacggccaaggcaacaaaggagtggctcaagaagaagc

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU650345 True 2102 TUCP 0.43 3 7438559 7440748

Neighbor

gene id symbol gene type direction distance location
LOC110528841 LOC106575888 coding upstream 115430 7318245 ~ 7323129 (+)
LOC110528848 LOC105022557 coding upstream 121847 7311121 ~ 7316712 (+)
LOC110528837 chsta coding upstream 145052 7288918 ~ 7293507 (+)
LOC110528851 LOC106575914 coding upstream 151850 7283440 ~ 7286709 (+)
LOC110527298 LOC106575763 coding upstream 254325 6934991 ~ 7187423 (+)
LOC118965230 NA coding downstream 26992 7467740 ~ 7471268 (+)
LOC110495398 rnd3 coding downstream 63262 7504010 ~ 7523841 (+)
LOC118965425 NA coding downstream 140366 7580087 ~ 7582949 (+)
LOC118965426 NA coding downstream 142772 7583520 ~ 7583673 (+)
LOC110495388 mmadhc coding downstream 183726 7624474 ~ 7632875 (+)
G570594 NA non-coding upstream 26704 7411512 ~ 7411855 (+)
G570590 NA non-coding upstream 36037 7402308 ~ 7402522 (+)
G570585 NA non-coding upstream 48823 7389442 ~ 7389736 (+)
G570583 NA non-coding upstream 53754 7384594 ~ 7384805 (+)
G570582 NA non-coding upstream 54157 7384191 ~ 7384402 (+)
G570602 NA non-coding downstream 8127 7448875 ~ 7449459 (+)
G570605 NA non-coding downstream 25342 7466090 ~ 7466318 (+)
G570606 NA non-coding downstream 27260 7468008 ~ 7468343 (+)
G570609 NA non-coding downstream 32982 7473730 ~ 7474058 (+)
G570614 NA non-coding downstream 44670 7485418 ~ 7485668 (+)
G570541 NA other upstream 131908 7304962 ~ 7306651 (+)
LOC110495616 LOC106574734 other upstream 604265 6805822 ~ 6834301 (+)
LOC110528754 LOC106575679 other upstream 672413 6761084 ~ 6767166 (+)
LOC118965228 LOC106575690 other upstream 905012 6531104 ~ 6533547 (+)
G570182 NA other upstream 986245 6450210 ~ 6452314 (+)
G570616 NA other downstream 46457 7487205 ~ 7487598 (+)
LOC118965232 LOC106575843 other downstream 382365 7822703 ~ 7827097 (+)
LOC110495467 LOC100653484 other downstream 489040 7900629 ~ 7934716 (+)
LOC110504762 LOC106573845 other downstream 573118 8008932 ~ 8017366 (+)
LOC110497026 ptprn other downstream 594924 8009587 ~ 8061480 (+)

Expression


Co-expression Network