XLOC_025098


Basic Information

Item Value
gene id XLOC_025098
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 11326162 ~ 11333666 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052326
cgtggGGGAACGTAATTTCAAATTGTAGAGGGTTGTGGTTTACGCAGGCCCTTGAAAATGTCTCTGGGGGCCCCTAAATGTATGGGCCCTAGGAATCATCCTAACTCCTcctgaagaagatttctattctctcagtgtgaagtattttctaagtgtaaagcagttaattttctcttcacaaaatgtatgtagtgtttgcagcaaacatgccagcctgtgttaaaaatacagtgatatgtctgtgtaagatgagtatgcctacaggagcaacactaggagaaggctgagtgactgattgtgtagaataactgaatatgtaaagcactgatcatatatgttaaatacttgtatgaagctatatgtgtcagaagttagaatgagtaacatattatcaagttattatcctatcataacaatgtatgtaaacacttaatccttttgcataagttgcatctatggagagagaactttggtgtcaaaacagttgctgacacagacctgtaacatctctgctgacatgagctagtgggctgagagccaagaatagcaggaccccttagactagaaacctattcaaaaatggtcaagagttaaaaagagacttaggggtgtgtcaaataatcctgtataaaaattgtaacaaacacagatacttcagaaggtgcaggagagacttcagaaggtgtccaggagagacttcagaatgctctggggtctgctctgctctttctcggctttattatggagaataaagtctatttcctgatattcaaaacctctggtctgataatttgtaattgattAGTCGTCAAAATTTACGACAAAtggcgcccaacgtggggctggaCAGAGACGAACAGGTGACACTGGACATGCTGGGGCTtggaggaaaaacacaaatatgtggccacgataaaaaacggaggctgggggaaaaaaggcaaaaatcctgtgaaatgctatttttactgAAGGACAGTAAAGACGGGAGCAGAAGTAACAggcactcaagaggagtgtag
>TCONS_00052327
cgtggGGGAACGTAATTTCAAATTGTAGAGGGTTGTGGTTTACGCAGGCCCTTGAAAATGTCTCTGGGGGCCCCTAAATGTATGGGCCCTAGGAATCATCCTAACTCCTcctgaagaagatttctattctctcagtgtgaagtattttctaagtgtaaagcagttaattttctcttcacaaaatgtatgtagtgtttgcagcaaacatgccagcctgtgttaaaaatacagtgatatgtctgtgtaagatgagtatgcctacaggagcaacactaggagaaggctgagtgactgattgtgtagaataactgaatatgtaaagcactgatcatatatgttaaatacttgtatgaagctatatgtgtcagaagttagaatgagtaacatattatcaagttattatcctatcataacaatgtatgtaaacacttaatccttttgcataagttgcatctatggagagagaactttggtgtcaaaacagttgctgacacagacctgtaacatctctgctgacatgagctagtgggctgagagccaagaatagcaggaccccttagactagaaacctattcaaaaatggtcaagagttaaaaagagacttaggggtgtgtcaaataatcctgtataaaaattgtaacaaacacagatacttcagaaggtgcaggagagacttcagaaggtgtccaggagagacttcagaatgctctggggtctgctctgctctttctcggctttattatggagaataaagtctatttcctgatattcaaaacctctggtctgataatttgtaattgattAGTCGTCAAAATTTACGACAAAtggcgcccaacgtggggctggaCAGAGACGAACAGGTGACACTGGACATGCTGGGGCTtggaggaaaaacacaaatatgtggccacgataaaaaacgaaatggctgaaagagatgaagatgatccatcaagaccaacgctcaatgaaatatgtgaaaataataaacttaatgggattaatgtgttaacaagtgcattgGTGATTGAGTCTATCTGTGGATGCTCTGGAGAGCTCAGGAGgaaaggaccatatctggatgagggcaaatccaacagctgccaaagtggatgccattaatggggtaccaatgcctcaaaggagcgaaaggaaacaactccagcaaggaaaagctgaccggaaacagaggagcctgaatattcCACAGCTCTAAACTACTAAGTGCAACATGTGAAAGCAAGAGTTTATCAGAGCAAAGAaaagagtgattctgataatTTGCCTGAGTACCACATACAGCAgtgccacaagtcaagggatgatgaatgcacaactgcagatttcagaactcagactcttaaccacacatctccatcaacatcttttcaaagtttaatgaagatgctgatagcttagaagaagagaaacaaggatgagcaaagatcaagatcaacatttgatgctttttacgtttgcatattgattttgtttgcatattgctttcatggtacctatatataatatcacttaagtatattctacatgagtgtgaaaactagcagctagcactgaaccaactgaatacttatgcttaaaactttattgtctttgatgtgttaagagaaaaacagagtacagtcttttacttccttcaaatcaAGGGGGAAGACgtttggctggacttctgtcaaagtacagtggcataatctggtcaattgataacagctatgtggctaatatcagtcactagatagaggtaattaagagaactggattatgaaattgcactttggggttaaaagacaataatattaagactaaagtcttaagaggagggattgaagaagatttctattctctcagtgtgaagtattttctaagtgtaaagcagttaattttctcttcacaaaatgtatgtagtgtttgcagcaaacatgccagcctgtgttaaaaatacagtgatatgtctgtgtaagatgagtatgcctacaggagcaacactaggagaaggctgagtgactgattgtgtagaataactgaatatgtaaagcactgatcatatatgttaaatacttgtatgaagctatatgtgtcagaagttagaatgagtaacatattatcaagttattatcctatcataacaatgtatgtaaacacttaatccttttgcataagttgcatctatggagagagaactttggtgtcaaaacagttgctgacacagacctgtaacatctctgctgacatgagctagtgggctgagagccaagaatagcaggaccccttagactagaaacctattcaaaaatggtcaagagttaaaaagagacttaggggtgtgtcaaataatcctgtataaaaattgtaacaaacacagatacttcagaaggtgcaggagagacttcagaaggtgtccaggagagacttcagaatgctctggggtctgctctgctctttctcggctttattatggagaataaagtctatttcctgatattcaa

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0048753 pigment granule organization biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0050931 pigment cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0048869 cellular developmental process biological_process
GO:0032438 melanosome organization biological_process
GO:0043473 pigmentation biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0048066 developmental pigmentation biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0048770 pigment granule cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0042470 melanosome cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005523 tropomyosin binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052326 False 1022 lncRNA 0.41 2 11326162 11327615
TCONS_00052327 True 2504 lncRNA 0.39 3 11326162 11333666

Neighbor

gene id symbol gene type direction distance location
XLOC_025097 NA coding upstream 127897 11188423 ~ 11198265 (+)
XLOC_025096 sstr5 coding upstream 203248 11101585 ~ 11122914 (+)
XLOC_025095 mrps7 coding upstream 250686 11072958 ~ 11075476 (+)
XLOC_025094 NA coding upstream 269239 10991040 ~ 11056923 (+)
XLOC_025093 NA coding upstream 326352 10953807 ~ 10999810 (+)
XLOC_025099 NA coding downstream 53272 11386938 ~ 11388541 (+)
XLOC_025100 mmd coding downstream 214850 11548516 ~ 11576337 (+)
XLOC_025101 CABZ01087224.1 coding downstream 234857 11568523 ~ 11587609 (+)
XLOC_025102 NA coding downstream 243009 11576675 ~ 11580720 (+)
XLOC_025103 NA coding downstream 521654 11855320 ~ 11858803 (+)
XLOC_025429 BX649540.1 misc downstream 18915073 30248739 ~ 30249036 (+)
XLOC_025092 NA non-coding upstream 331557 10943127 ~ 10994605 (+)
XLOC_025091 NA non-coding upstream 387756 10933486 ~ 10938406 (+)
XLOC_025105 NA non-coding downstream 741222 12074888 ~ 12075135 (+)
XLOC_025106 NA non-coding downstream 743186 12076852 ~ 12081373 (+)

Expression


Co-expression Network