XLOC_025100 (mmd)


Basic Information

Item Value
gene id XLOC_025100
gene name mmd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 11548516 ~ 11576337 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049625
CTAGTCACAGAAAGAGCGTTAAAGGTAGAGAAGGAGAGAGGGGGACCGGACGAGAGACGGAATGATGTGACAAAACCCAGCTTTACGGATGATTCAGGGTATTTTGAGGGAGCTGTGGTGATACGGAAGCGTTATGTGTCGAAGTGGGATTGTTTTTTTGTGAATGAGGCCTCGAACATCCGATTCATTTGTTATCATCCGATTATTTTTGCTGACCCCAgacctgtgtttgtttgtgtaaatatTCGCGAGATGAAGAGGGTGAATAGTTTCCAGAGGTTTATGAACACACGGGCAGCTGCAAACTGCCGTTACCAGCCCACATGTTATGAGCACGCCGCCAACTGCTACACCCATGCGCTGCTGATCATGCCAGCGTTTGTGGGCATGGCTCTTTTACACCGGCTGTCAGATGACCGCTGGGAGAGATTTACAGCCTGGGTGTACGGCATGGGTCTGATCGCCCTGTTCCTCGTCTCTACGGTCTTTCACATCATCTCCTGGAAGAAGAGCCacatgaggacGATGGAGCACTGTTTCCACATGTGTGATAGAGTTGTTATATACTTCTTTATTGCTGCCTCTTATACACCATGgttGAATCTCCGGGAACTCGGGCCGCTTGCCGCTCACATGCGCTGGTTTGTGTGGTTGATGGCGGCTGCCGGAACAATCTATGTGTTTAATTACCACGAAAAGTATAAGCTGGTGGAGCTGATGTTTTATCTGACCATGGGCTTCTTCCCTGCGCTGGTGGTGACATCAATGACGAACACGGAGGGTCTGAGTGAGCTGGCGTTCGGGGGTCTGGTCTACTGTCTGGGAGTGTTTTTCTTCAAGTGTGACGGCGTGATTCCCTTCGCTCACGCTATCTGGCACGTGTTTGTGGCGCTGGCGGCCGCCATTCATTACTATGCCATCTGGAAATACCTGTACCGCAGTCCTGCGCTGGAGGACATCAGAGACGCCTGAGCcacaaacaaacaactaactcatcatcatcatcatcatcatcatcatcatcatcaaaaacaCCAACGTTTACCAGGATGACCATGCAATGTTTACGGTTTTCTTACCAGCTCAGAGtatatccgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgttgcagtgcTGAATGTACAACTGCAACAagactgctgtgtgtgtgcgcgtgcatttGTTTTTCCCCCCTTTTCATCAGTATTATGTAAATATTTGCCACTGAAAGCAGATGAATTGTGATATTTActgattttattagattttttgggCGTGCattcagtctcacacacacattcagtagtTGTTTCAGATCATCTgtaatgaatttttttattcatcttaCGACATCAGTGTTTGGTTAAGAAAGTAATATATCACGATCTGTAAACGGTAACACTTATGGTAACAATAATGTTGTGTTAATGTTATTGTGTTTGCTGACATGAACAAACAAGCAATCTTAAAAATGGTAGCATAATAagattgtttaaattaatttcattttgctttgttaatgtatttactaacataaacaaacaatgagcgACACATTAatcacagtatttattcatcattaAGATTAATTAATGGAAGTAATGTTGTTCGTTGTTAATCACCGTTAACTCAAAGCGCAATAACTAATGATACAAGCACAACTTAAGATTTTACTAATATAATGgtaaatgatttataaataccGTATTGTTCATTAGTAAACACAGTAACTAATTAAAAATTATTGGAAAGTGTGGCCATTAAAACATTCT

Function

symbol description
mmd Acts upstream of or within atrioventricular canal development; endocardial cushion formation; and regulation of Ras protein signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; nervous system; notochord; pectoral fin; and ventral mesoderm. Orthologous to human MMD (monocyte to macrophage differentiation associated).

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0046578 regulation of Ras protein signal transduction biological_process
GO:0019835 cytolysis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051120-39 Acts upstream of or within atrioventricular canal development; endocardial cushion formation; and regulation of Ras protein signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; nervous system; notochord; pectoral fin; and ventral mesoderm. Orthologous to human MMD (monocyte to macrophage differentiation associated).

Ensembl:

ensembl_id ENSDARG00000040387

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049625 True 1781 mRNA 0.43 7 11548516 11576337

Neighbor

gene id symbol gene type direction distance location
XLOC_025099 NA coding upstream 159975 11386938 ~ 11388541 (+)
XLOC_025098 NA coding upstream 214850 11326162 ~ 11333666 (+)
XLOC_025097 NA coding upstream 350251 11188423 ~ 11198265 (+)
XLOC_025096 sstr5 coding upstream 425602 11101585 ~ 11122914 (+)
XLOC_025095 mrps7 coding upstream 473040 11072958 ~ 11075476 (+)
XLOC_025102 NA coding downstream 338 11576675 ~ 11580720 (+)
XLOC_025103 NA coding downstream 278983 11855320 ~ 11858803 (+)
XLOC_025104 dnaja3a coding downstream 349693 11926030 ~ 11947672 (+)
XLOC_025105 NA coding downstream 498551 12074888 ~ 12075135 (+)
XLOC_025106 NA coding downstream 500515 12076852 ~ 12081373 (+)
XLOC_025429 BX649540.1 misc downstream 18672402 30248739 ~ 30249036 (+)
XLOC_025094 NA non-coding upstream 491593 10991040 ~ 11056923 (+)
XLOC_025093 NA non-coding upstream 548706 10953807 ~ 10999810 (+)
XLOC_025107 NA non-coding downstream 663355 12239692 ~ 12264458 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000173_00285596_00297618 MMD, PAQRB coding CI01000173 null 285596 ~ 297857 (+)