G570651


Basic Information

Item Value
gene id G570651
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7575295 ~ 7580028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU650401
cctatgatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtgcacctccaattgactcaaataatgtcaattagcctatcagaagcttctaaagccatgacatcatttcctaGGACTTTTCCACGCTGTTTAATGGCActgtcaacttactgtatgtaaacttctgaccgactggaattgtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacatggtcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacgccggtctttgggtgaccaggtgcacaagttccatttgggtgaccaggtgcacaagttccatttgggtgaccaggtgcacgcggttcataacagcgcggttatctgctttaatgtccgaggaggggtgcttaagtgtgggtgccctggttcacctggtatgcgaggttgtggaggtggggggggtcccctgctggtgtcatccccgaaatagaggggtgatacccgggtggtgagtaagggcctacaagcctggaggtcaatagctccagggggtaagctctactgtcatgtccgtaaatagagtggtgttacccgggttttgaaccatattttaatttttgggttaccagatgcacacgggtcttttggaaaacaatcacaatctgcatccatcgtaatatatgaaactgtatataaagca
>TU650411
cctatgatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtgcacctccaattgactcaaataatgtcaattagcctatcagaagcttctaaagccatgacatcatttcctaGGACTTTTCCACGCTGTTTAATGGCActgtcaacttactgtatgtaaacttctgaccgactggaattgtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacaagttccatttgggtgaccaggtgcacaagttccatttgggtgaccaggtgcacgcggttcataacagcgcggttatctgctttaatgtccgaggaggggtgcttaagtgtgggtgccctggttcacctggtatgcgaggttgtggaggtggggggggtcccctgctggtgtcatccccgaaatagaggggtgatacccgggtggtgagtaagggcctacaagcctggaggtcaatagctccagggggtaagctctactgtcatgtccgtaaatagagtggtgttacccgggttttgaaccatattttaatttttgggttaccagatgcacacgggtcttttggaaaacaatcacaatctgcatccatcgtaatatatgaaactgtatataaagca
>TU650412
cctatgatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtgcacctccaattgactcaaataatgtcaattagcctatcagaagcttctaaagccatgacatcatttcctaGGACTTTTCCACGCTGTTTAATGGCActgtcaacttactgtatgtaaacttctgaccgactggaattgtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacatggtcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggtctttgggtgaccaggtgcacaagttccatttgggtgaccaggtgcacaagttccatttgggtgaccaggtgcacgcggttcataacagcgcggttatctgctttaatgtccgaggaggggtgcttaagtgtgggtgccctggttcacctggtatgcgaggttgtggaggtggggggggtcccctgctggtgtcatccccgaaatagaggggtgatacccgggtggtgagtaagggcctacaagcctggaggtcaatagctccagggggtaagctctactgtcatgtccgtaaatagagtggtgttacccgggttttgaaccatattttaatttttgggttaccagatgcacacgggtcttttggaaaacaatcacaatctgcatccatcgtaatatatgaaactgtatataaagca
>TU650404
gattaatagcaatctgcatccatcgtgatttcttaaactgtctaaaaagcactcaaggacggccctgacagagagagggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtatttaaaacccttttataatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggaaaatgagcatttgcatccatagtcatgttttaaaccgtccataaagcactcttggccggccccggcagagagagaaagagatggtgaaaaaaaaaaaatatcatcatcagaccttccataaataattcggaccggcccccattgctaaaggtccgtagtagggtgcatcattatcggacatgaatctcgggaacaccgctaaccgcatagagaaccgtgttttgggttaccagatgcacgttttcaatcaccagttgcacggagaaaaaaaaagtaatcataccttccataaataattcaggccgacccccattgaaaaaggtccgtagtagggtgcatcattatcggacatgtatatctgtaacaccggcaagcgcattgagaaccgcatttttgggttaccagatgcacgttttcaatcaccaggtgcacggctgtgaaaagtgggactctgtcattttttcgaccaatttctgtaattttcaaaaaatgattaaaaatacttcccgaagggctagaggtcccaaatttcgtctcataccctctctcgtgatgggcaacaattacataatgtaaaaaaaatttcgcatccacaggaacctatgcatcctgtgacattcacttttttcccaaaacttgaaacacgatttcctattaaaatgttttatacaaaaacgtttttaattgaatgtaaaggctcgtctatttatgcactttcgtgcaaaaaaaaccccatcaagatcggatgtgtactttttgatttatcacgtttttgttgaatttgacccccgatggtggggcgcacagaagccctgtgaggttcagggcttcatcgatatttggcctgttttggattacacactcagtggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU650401 False 768 lncRNA 0.51 2 7575295 7576114
TU650411 False 741 lncRNA 0.51 3 7575295 7576114
TU650412 False 767 lncRNA 0.51 2 7575295 7576114
TU650404 True 1070 lncRNA 0.42 2 7578788 7580028

Neighbor

gene id symbol gene type direction distance location
LOC110495398 rnd3 coding upstream 51454 7504010 ~ 7523841 (+)
LOC118965230 NA coding upstream 104027 7467740 ~ 7471268 (+)
LOC110496979 LOC106574832 coding upstream 109616 7434922 ~ 7465679 (+)
LOC110528841 LOC106575888 coding upstream 252166 7318245 ~ 7323129 (+)
LOC110528848 LOC105022557 coding upstream 258583 7311121 ~ 7316712 (+)
LOC118965425 NA coding downstream 1086 7580087 ~ 7582949 (+)
LOC118965426 NA coding downstream 3492 7583520 ~ 7583673 (+)
LOC110495388 mmadhc coding downstream 44446 7624474 ~ 7632875 (+)
LOC118965231 LOC106593490 coding downstream 93517 7673545 ~ 7676737 (+)
LOC110491192 orc4 coding downstream 149438 7729466 ~ 7734571 (+)
G570645 NA non-coding upstream 23421 7551552 ~ 7551874 (+)
G570639 NA non-coding upstream 37491 7537492 ~ 7537804 (+)
G570638 NA non-coding upstream 37921 7536913 ~ 7537374 (+)
G570637 NA non-coding upstream 39918 7534984 ~ 7535377 (+)
G570627 NA non-coding upstream 66200 7508630 ~ 7509095 (+)
G570516 NA non-coding downstream 4508 7584536 ~ 7585026 (+)
G570659 NA non-coding downstream 35363 7615391 ~ 7615783 (+)
G570662 NA non-coding downstream 48607 7628635 ~ 7629598 (+)
G570665 NA non-coding downstream 64731 7644759 ~ 7659187 (+)
G570616 NA other upstream 87697 7487205 ~ 7487598 (+)
G570601 LOC100846954 other upstream 134547 7438559 ~ 7440748 (+)
G570541 NA other upstream 268644 7304962 ~ 7306651 (+)
LOC110495616 LOC106574734 other upstream 741001 6805822 ~ 6834301 (+)
LOC110528754 LOC106575679 other upstream 809149 6761084 ~ 6767166 (+)
LOC118965232 LOC106575843 other downstream 243085 7822703 ~ 7827097 (+)
LOC110495467 LOC100653484 other downstream 349760 7900629 ~ 7934716 (+)
LOC110504762 LOC106573845 other downstream 433838 8008932 ~ 8017366 (+)
LOC110497026 ptprn other downstream 455644 8009587 ~ 8061480 (+)
G570827 LOC107379067 other downstream 483079 8063107 ~ 8071558 (+)

Expression


Co-expression Network