G570695


Basic Information

Item Value
gene id G570695
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7708192 ~ 7709321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU650474
CCAGTTTTTAATATCTTAAAACATCTGTGCAACATTGTTCGAACGTTACATCACTGTATGACCCGTCATGTTTACaatatgtacaaaataaaaaacggCTGCTGACATGAAATAATAGACAACGCcaaacaatgagaaaatatggaaCTTCACACTATTTGTCCTAGCACCCACAATGCAACAAATGACATCAAGTGCACAACACACTTTACAAAGGAGTCTACTTTTTGtaaagtagacacacacacacacacacacacacacacacacattagtgaGAACTTAGTTACATGTGGAAAAAACAACACTGACAACAGCAACATGTTAATAACACACAAATAAAGATTCAAAGAGCAAGCAAGGGTAAGaaaaacagcacacacacacacacctccaaaaataaaacacacacacacacgcgtgtgaATAAATTGTGCTGCACTGACCATTTGACCGACAACAGAAAGGTAAAAGTGAAAAGACGTTATACAACATGGGGTTTGAACATGAGACTGACTGGGTCTGTCGGTCGTTGCACAAGGGCAGAATGAACTTCACGTGTTCTCTCGACTGCTCTCAAGAGTATTTGTGAAAAGCTTCATTAAAAGCATGAATACTTTTCTAGAAGTAGAGTGAAATACTTTTCTGTCTGGAGTGAATTACAGTTGATCCATCTAGACATGGTTTGAATAACATGAACGGTTACACAGAttatcattttttatatttttttaaaggttgACGTTCTGAAGTTGTTTTAATGATTTATGATGTAACTTATTTGTATTGCACACAACACGCTGTAGTGAATATAACAAGTCTGTTTTCAATGGGGCAATAAAACGCATCCAAATCTCATCAGCACAAAACGTAGTGAAGCTGTTCTATATGGGGACAGTCTCCGATTAACAAACTTCTATTGGAATTGTACTCAGTAGTGATTTCTCCTCTAAACAACTCCACGACAGCACTGACAGGGC
>TU650472
ACATCACTGTATGACCCGTCATGTTTACaatatgtacaaaataaaaaacggCTGCTGACATGAAATAATAGACAACGCcaaacaatgagaaaatatggaaCTTCACACTATTTGTCCTAGCACCCACAATGCAACAAATGACATCAAGTGCACAACACACTTTACAAAGGAGTCTACTTTTTGtaaagtagacacacacacacacacacacacacacacacacattagtgaGAACTTAGTTACATGTGGAAAAAACAACACTGACAACAGCAACATGTTAATAACACACAAATAAAGATTCAAAGAGCAAGCAAGGGTAAGaaaaacagcacacacacacacacctccaaaaataaaacacacacacacacgcgtgtgaATAAATTGTGCTGCACTGACCATTTGACCGACAACAGAAAGGTAAAAGTGAAAAGACGTTATACAACATGGGGTTTGAACATGAGACTGACTGGGTCTGTCGGTCGTTGCACAAGGGCAGAATGAACTTCACGTGTTCTCTCGACTGCTCTCAAGAGTATTTGTGAAAAGCTTCATTAAAAGCATGAATACTTTTCTAGAAGTAGAGTGAAATACTTTTCTGTCTGGAGTGAATTACAGTTGATCCATCTAGACATGGTTTGAATAACATGAACGGTTACACAGAttatcattttttatatttttttaaaggttgACGTTCTGAAGTTGTTTTAATGATTTATGATGTAACTTATTTGTATTGCACACAACACGCTGTAGTGAATATAACAAGTCTGTTTTCAATGGGGCAATAAAACGCATCCAAATCTCATCAGCACAAAACGTAGTGAAGCTGTTCTATATGGGGACAGTCTCCGATTAACAAACTTCTATTGGAATTGTACTCAGTAGTGATTTCTCCTCTAAACAACTCCACGACAGCACTGACAGGGCTCGGCCTGAGGGCCCAAACCGACAGGGCTCGGCCTGAAGGGCCAAACCGACAGGGCTCGGCCTGAAGGGCCAAACCGACAGGGCTCGGCCTGAAGGCCCAAACCGACAGGGCTCGGCCTGAAGGCCCAAACCGACAGGGCTCGGCCTGAA
>TU650473
ACATCACTGTATGACCCGTCATGTTTACaatatgtacaaaataaaaaacggCTGCTGACATGAAATAATAGACAACGCcaaacaatgagaaaatatggaaCTTCACACTATTTGTCCTAGCACCCACAATGCAACAAATGACATCAAGTGCACAACACACTTTACAAAGGAGTCTACTTTTTGtaaagtagacacacacacacacacacacacacacacacacattagtgaGAACTTAGTTACATGTGGAAAAAACAACACTGACAACAGCAACATGTTAATAACACACAAATAAAGATTCAAAGAGCAAGCAAGGGTAAGaaaaacagcacacacacacacacctccaaaaataaaacacacacacacacgcgtgtgaATAAATTGTGCTGCACTGACCATTTGACCGACAACAGAAAGGTAAAAGTGAAAAGACGTTATACAACATGGGGTTTGAACATGAGACTGACTGGGTCTGTCGGTCGTTGCACAAGGGCAGAATGAACTTCACGTGTTCTCTCGACTGCTCTCAAGAGTATTTGTGAAAAGCTTCATTAAAAGCATGAATACTTTTCTAGAAGTAGAGTGAAATACTTTTCTGTCTGGAGTGAATTACAGTTGATCCATCTAGACATGGTTTGAATAACATGAACGGTTACACAGAttatcattttttatatttttttaaaggttgACGTTCTGAAGTTGTTTTAATGATTTATGATGTAACTTATTTGTATTGCACACAACACGCTGTAGTGAATATAACAAGTCTGTTTTCAATGGGGCAATAAAACGCATCCAAATCTCATCAGCACAAAACGTAGTGAAGCTGTTCTATATGGGGACAGTCTCCGATTAACAAACTTCTATTGGAATTGTACTCAGTAGTGATTTCTCCTCTAAACAACTCCACGACAGCACTGACAGGGC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU650474 False 980 lncRNA 0.37 1 7708192 7709171
TU650472 False 1083 lncRNA 0.42 1 7708239 7709321
TU650473 True 933 lncRNA 0.38 1 7708239 7709171

Neighbor

gene id symbol gene type direction distance location
LOC118965231 LOC106593490 coding upstream 31455 7673545 ~ 7676737 (+)
LOC110495388 mmadhc coding upstream 75317 7624474 ~ 7632875 (+)
LOC118965426 NA coding upstream 124519 7583520 ~ 7583673 (+)
LOC118965425 NA coding upstream 125243 7580087 ~ 7582949 (+)
LOC110495398 rnd3 coding upstream 184351 7504010 ~ 7523841 (+)
LOC110491192 orc4 coding downstream 20145 7729466 ~ 7734571 (+)
LOC110491194 hsf2bp coding downstream 26253 7735574 ~ 7745976 (+)
LOC110491195 NA coding downstream 37866 7747187 ~ 7748423 (+)
LOC110491196 LOC106575747 coding downstream 40085 7749406 ~ 7767337 (+)
LOC118965232 LOC106575843 coding downstream 113382 7822703 ~ 7827097 (+)
G570683 LOC106574758 non-coding upstream 17191 7690214 ~ 7691001 (+)
G570679 NA non-coding upstream 41282 7666445 ~ 7666910 (+)
G570674 NA non-coding upstream 47869 7660122 ~ 7660323 (+)
G570665 NA non-coding upstream 49005 7644759 ~ 7659187 (+)
G570671 NA non-coding upstream 51577 7654851 ~ 7656615 (+)
G570696 NA non-coding downstream 998 7710319 ~ 7711800 (+)
G570731 NA non-coding downstream 76800 7786121 ~ 7787688 (+)
G570741 LOC106561090 non-coding downstream 88288 7797609 ~ 7798425 (+)
G570742 NA non-coding downstream 88814 7798135 ~ 7798834 (+)
G570743 NA non-coding downstream 93556 7802877 ~ 7804126 (+)
G570616 NA other upstream 220594 7487205 ~ 7487598 (+)
G570601 LOC100846954 other upstream 267444 7438559 ~ 7440748 (+)
G570541 NA other upstream 401541 7304962 ~ 7306651 (+)
LOC110495616 LOC106574734 other upstream 873898 6805822 ~ 6834301 (+)
LOC110528754 LOC106575679 other upstream 942046 6761084 ~ 6767166 (+)
LOC110495467 LOC100653484 other downstream 220467 7900629 ~ 7934716 (+)
LOC110504762 LOC106573845 other downstream 304545 8008932 ~ 8017366 (+)
LOC110497026 ptprn other downstream 326351 8009587 ~ 8061480 (+)
G570827 LOC107379067 other downstream 353786 8063107 ~ 8071558 (+)

Expression


Co-expression Network