XLOC_025103


Basic Information

Item Value
gene id XLOC_025103
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 11855320 ~ 11858803 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052610
cttttactttcagtacttgagtagtaaattttgaaataaactacttgcaatacttaagtacaaaaaatgttgaatacttttgtacttccacttaagtatggtgcttaaagagcacttctacttctactcaagtcaatttttgataaagcacttgtacttttacttaagtatgggtctctagtactttatacatctctgagtCTAGGTTTTGTTCATGTTGTCAtatctattctttttttttttttaataacagagCATATGCTATACCTAAATATTTAGCTACAGCATTCATTTCCTCGtctgtcattttattaatttcCTGACACATTTTTTGAGggcctaaaataaaaacaaccatACAACACTGCACTTCTTAGTTACTGACCTAAAAATGGTCATCTGTGCATGATTTTGAACACAGACAGAGGGAAGCTCATTATGCAAAGCTAACAATGACATCCTGAGTCATTCACACAGGGTGGATCTCAGTGCTGACGTTGCTGCAGGCTTTTCCAGTTCATCCGGTTTGAAGAAAAGCCGTCTGaccaaaacacaacacaataagAGGCGAAAACCAGACTCTGCTTGTCATTAACTGAACGTAAACttcattttataaattaaacatgCATGACAAACTCTCCACAGTGTGATTTACGTACAATTCACATTCATCATCAATGCCTACTGTTCTCTTTAGCTATATTGGCAACAATAGTGACAGTAAATCTGTAAATGGAGGCAAACGAATGGCAAAATGGCAAGACGTCACTGTTAAATCAATAATTAGCTTTCAGATATAGTGCAGTCTGTGGTCTGAGGCTCTTCTTCAAATGTTTTGTCATAAAGTGCATGAGAGGATCTTCCGAAAATAAGAGTCAGGAACTCCACAAGTGATATTCTGAAGTTAGTCTTTCATTCGTAGGCTAACGCATTAGCtacttggataaaaatatgaaCATATTTAAAATCCGTTTCAAGTTTGTGCCGATATTTGGGGTCCATTTTTTTGCTGTTGAATTTCAGTGATGGGATTTATCTTCCAATACACCATTTTGTGCCCACATCCAGACATCCTGGAATCATCTACAAATGAAAAGTCCCAACATTCAAGACATTGGAGAATACTGAAGATCCAATTGTTGACTCCAACCAACACATCATCCTTCCTGGGGAGTCGTCGAGTGATATCTAAAGTTCATTTATTTGAACAAATCAAAACAACTTCCTTGTTGACTTGAAGTtgcttcaaaaaatgtaaatcagaCTCTTCATAACCAGATCAGTCTTTAATGAAATCAATTAATTTGACATCTCCATACTTGTCCCCCAGTCCACAGTCATCCCGCTCATTTTGGCAAGAGCTCCGGAGTTTTCCGTGAGGTTCCCCAGATAACAAATGTCCAACACACCATTTTTGTAAAAATTCCAACATCCTGGTGGCATCTGCAAATGAAAAGTCCCAACATCCAAGACATTGTGTGTATATTGGAGATCCAACAGATCAACCAACCCACACGTCATCCTTTCTTGAGAGTCGTTGAGTGATTCCTTAAGTTCATTTACCTAAATGAATTCATAATCAAAACTTCCCTGGTGACTTAAAGTGGCTTTAGAAAATGAGAATACGACTTTTAAACCAGCATATGTCTTTTAaagccaagccagagaaaatcaATTCATCTCCACACCCTTCATCCAGTCCATATTAATTCTGCTCATTTGGGCAAGAGCTCCCGATATGGCACCGTGAGGTTCCCCAGATACCAAAAAATCCAAAACACCAAACTGAGGAAGACGATGATCGGCCCAGACAGGATTAAGAAGTCCCAAAAGCTGAGCGGTGCAAAAATGCCAACGAAGAAGAGGACCAGTCCGACTATATCAAACACAAGAGCCAGGAGGAAGAAAACAAAGCAGCGTCCAACTTTTTCCTTGCAGTCCATCTTGAAGAAGCTCAGATGAAGGAGAGCCGATGGACATACGACTGAACGGCAGAACAGATTCTGTGCATATGACTTTTATGAAGCAGCTCAGCTGCATTCTTACGTGGGGAATTTCTTTAACAGGGCAGGTAAGGAATGCAGCCACTGAAACAAGTTCATCT
>TCONS_00052611
GTCATTCACACAGGGTGGATCTCAGTGCTGACGTTGCTGCAGGCTTTTCCAGTTCATCCGGTTTGAAGAAAAGCCGTCTGaccaaaacacaacacaataagAGGCGAAAACCAGACTCTGCTTGTCATTAACTGAACGTAAACttcattttataaattaaacatgCATGACAAACTCTCCACAGTGTGATTTACGTACAATTCACATTCATCATCAATGCCTACTGTTCTCTTTAGCTATATTGGCAACAATAGTGACAGTAAATCTGTAAATGGAGGCAAACGAATGGCAAAATGGCAAGACGTCACTGTTAAATCAATAATTAGCTTTCAGATATAGTGCAGTCTGTGGTCTGAGGCTCTTCTTCAAATGTTTTGTCATAAAGTGCATGAGAGGATCTTCCGAAAATAAGAGTCAGGAACTCCACAAGTGATATTCTGAAGTTAGTCTTTCATTCGTAGGCTAACGCATTAGCtacttggataaaaatatgaaCATATTTAAAATCCGTTTCAAGTTTGTGCCGATATTTGGGGTCCATTTTTTTGCTGTTGAATTTCAGTGATGGGATTTATCTTCCAATACACCATTTTGTGCCCACATCCAGACATCCTGCAAGCATTTACAAATGAAAAGTCCCAACATTCAAGGGACTGTGTGTATATTGGTGATCCAACAGTTAACCAACCAACCCGTCATCCTTCCTGAGAGTCGTTGAGTCATTTCTAAGTTAATTTAAgtgaataaataactaaaaacttCCTGAGTGACTTGAAGTGGctttagaaaatgtaaataagaCTTTTATAACCAGTTTCTCTTTGAAACCAAGCAAAATCAAGTAATTTCTTCTCCATACCCGTCCTCTAGTGCATTTTCATGCTGCTTATTTGGATAAGAGCTACTGATATGACACTGTGAGGTTCCCTAGATTCCAAAAAAAATCCAAACACCATTTTTCCATCCTGGATGCATCTACAAATTTGAAGTGCAAACATTTAAGACATTGCGTGTACATTGGCGATCCAATGGTTGAATTCAATTAACAAAGCAACCATCTTCCTGAGAGTTGTCAAGTGGTTTTTAAAGGTAATTtccttgaatacattttttaaaacttccTTGCTGACTTGAAGTGGCTTCAGAAAGTGTATCATAACCAgcatttgtctttaaaacgaagcGGCAGaaacttatttaattttattttatctttatactCCTCCTCCAGTCCACATTCATGCCACTCATTTGGGCAAGAGGTCCCAATATGACACTGTCAGCTTCATCAGATACCAAAAATTCAACACACAATTTTTTGTCCAAATCCAGACATCCTTGAAGCAACTACAGATGAAAATCCAAGTATTCAAGACATTGTGTATGTTGGAGATTCAATTGACTACCAACATGTCATCCATTTTGGGCGTCTTTGGGTgatttttaaagttaatttaaaaactttttaaagccAAGCGGTGTGAAATCAATTAATCTGACATCTCCATACTTGTCCCCCAGTCCACAGTCATCCCGCTCATTTTGGCAAGAGCTCCGGAGTTTTCCGTGAGGTTCCCCAGATAACAAATGTCCAACACACCATTTTTGTAAAAATTCCAACATCCTGGTGGCATCTGCAAATGAAAAGTCCCAACATCCAAGACATTGTGTGTATATTGGAGATCCAACAGATCAACCAACCCACACGTCATCCTTTCTTGAGAGTCGTTGAGTGATTCCTTAAGTTCATTTACCTAAATGAATTCATAATCAAAACTTCCCTGGTGACTTAAAGTGGCTTTAGAAAATGAGAATACGACTTTTAAACCAGCATATGTCTTTTAaagccaagccagagaaaatcaATTCATCTCCACACCCTTCATCCAGTCCATATTAATTCTGCTCATTTGGGCAAGAGCTCCCGATATGGCACCGTGAGGTTCCCCAGATACCAAAAAATCCAAAACACCAAACTGAGGAAGACGATGATCGGCCCAGACAGGATTAAGAAGTCCCAAAAGCTGAGCGGTGCAAAAATGCCAACGAAGAAGAGGACCAGTCCGACTATATCAAACACAAGAGCCAGGAGGAAGAAAACAAAGCAGCGTCCAACTTTTTCCTTGCAGTCCATCTTGAAGAAGCTCAGATGAAGGAGAGCCGATGGACATACGACTGAACGGCAGAACAGATTCTGTGCATATGACTTTTATGAAGCAGCTCAGCTGCATTCTTACGTGGGGAATTTCTTTAACAGGGCAGGTAAGGAATGCAGCCACTGAAACAAGTTCATCT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0021538 epithalamus development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0048522 positive regulation of cellular process biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0009893 positive regulation of metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:0048592 eye morphogenesis biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0040011 locomotion biological_process
GO:0097485 neuron projection guidance biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0042330 taxis biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052610 False 2107 lncRNA 0.39 2 11855320 11858803
TCONS_00052611 True 2295 lncRNA 0.39 2 11855784 11858803

Neighbor

gene id symbol gene type direction distance location
XLOC_025101 CABZ01087224.1 coding upstream 267711 11568523 ~ 11587609 (+)
XLOC_025102 NA coding upstream 274600 11576675 ~ 11580720 (+)
XLOC_025100 mmd coding upstream 278983 11548516 ~ 11576337 (+)
XLOC_025099 NA coding upstream 466779 11386938 ~ 11388541 (+)
XLOC_025098 NA coding upstream 521654 11326162 ~ 11333666 (+)
XLOC_025104 dnaja3a coding downstream 67227 11926030 ~ 11947672 (+)
XLOC_025105 NA coding downstream 216085 12074888 ~ 12075135 (+)
XLOC_025106 NA coding downstream 218049 12076852 ~ 12081373 (+)
XLOC_025107 NA coding downstream 380889 12239692 ~ 12264458 (+)
XLOC_025108 glis2b coding downstream 463367 12322170 ~ 12335927 (+)
XLOC_025429 BX649540.1 misc downstream 18389936 30248739 ~ 30249036 (+)
XLOC_025097 NA non-coding upstream 657055 11188423 ~ 11198265 (+)
XLOC_025094 NA non-coding upstream 798397 10991040 ~ 11056923 (+)
XLOC_025122 NA non-coding downstream 979891 12838694 ~ 12854479 (+)
XLOC_025125 LO018183.1 non-coding downstream 1290747 13149550 ~ 13167328 (+)

Expression


Co-expression Network