Gene
RNA
| Item | Value |
|---|---|
| gene id | G570741 |
| gene name | LOC106561090 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 7797609 ~ 7798425 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: keratin-associated protein 16-1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU650543 | False | 307 | lncRNA | 0.35 | 2 | 7797609 | 7798425 |
| TU650544 | True | 223 | lncRNA | 0.35 | 2 | 7797609 | 7798071 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110491196 | LOC106575747 | coding | upstream | 30272 | 7749406 ~ 7767337 (+) |
| LOC110491195 | NA | coding | upstream | 49186 | 7747187 ~ 7748423 (+) |
| LOC110491194 | hsf2bp | coding | upstream | 51633 | 7735574 ~ 7745976 (+) |
| LOC110491192 | orc4 | coding | upstream | 63038 | 7729466 ~ 7734571 (+) |
| LOC118965231 | LOC106593490 | coding | upstream | 120872 | 7673545 ~ 7676737 (+) |
| LOC118965232 | LOC106575843 | coding | downstream | 24278 | 7822703 ~ 7827097 (+) |
| LOC110525651 | LOC106575849 | coding | downstream | 97162 | 7895587 ~ 7900191 (+) |
| LOC110495467 | LOC100653484 | coding | downstream | 102204 | 7900629 ~ 7934716 (+) |
| LOC110504762 | LOC106573845 | coding | downstream | 210507 | 8008932 ~ 8017366 (+) |
| LOC110497026 | ptprn | coding | downstream | 220008 | 8009587 ~ 8061480 (+) |
| G570731 | NA | non-coding | upstream | 9921 | 7786121 ~ 7787688 (+) |
| G570696 | NA | non-coding | upstream | 85809 | 7710319 ~ 7711800 (+) |
| G570695 | NA | non-coding | upstream | 88288 | 7708192 ~ 7709321 (+) |
| G570683 | LOC106574758 | non-coding | upstream | 106608 | 7690214 ~ 7691001 (+) |
| G570679 | NA | non-coding | upstream | 130699 | 7666445 ~ 7666910 (+) |
| G570743 | NA | non-coding | downstream | 4452 | 7802877 ~ 7804126 (+) |
| G570750 | NA | non-coding | downstream | 30422 | 7828847 ~ 7830431 (+) |
| G570769 | NA | non-coding | downstream | 77970 | 7876395 ~ 7877367 (+) |
| G570772 | NA | non-coding | downstream | 82109 | 7880534 ~ 7880922 (+) |
| G570773 | NA | non-coding | downstream | 82828 | 7881253 ~ 7881486 (+) |
| G570616 | NA | other | upstream | 310011 | 7487205 ~ 7487598 (+) |
| G570601 | LOC100846954 | other | upstream | 356861 | 7438559 ~ 7440748 (+) |
| G570541 | NA | other | upstream | 490958 | 7304962 ~ 7306651 (+) |
| LOC110495616 | LOC106574734 | other | upstream | 963315 | 6805822 ~ 6834301 (+) |
| LOC110528754 | LOC106575679 | other | upstream | 1031463 | 6761084 ~ 6767166 (+) |
| G570827 | LOC107379067 | other | downstream | 264682 | 8063107 ~ 8071558 (+) |
