XLOC_025105


Basic Information

Item Value
gene id XLOC_025105
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12074888 ~ 12075135 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052612
gtgacttctTGAGAAGTCCAAATTCTGGACCCTTCAAGGAGCTCATATAGTCGGTATTTGGAAAATCAACCACAGAGGAATGTTATAATGacactgtttaaaaaaaggcGAGCAAGCCGAGGGGCCTTTTGTTCTGAGACAGCCTGAAAAGAAAATTCATTTCCTGTCTGACAGATTACAGGATTActagggggagaaaaaaaaacgctACAAAGGGTACATGAGAAGTCAAAAGTGTCAGTTTTGCT

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052612 True 248 lncRNA 0.41 1 12074888 12075135

Neighbor

gene id symbol gene type direction distance location
XLOC_025104 dnaja3a coding upstream 127216 11926030 ~ 11947672 (+)
XLOC_025103 NA coding upstream 216085 11855320 ~ 11858803 (+)
XLOC_025101 CABZ01087224.1 coding upstream 487279 11568523 ~ 11587609 (+)
XLOC_025102 NA coding upstream 494168 11576675 ~ 11580720 (+)
XLOC_025100 mmd coding upstream 498551 11548516 ~ 11576337 (+)
XLOC_025106 NA coding downstream 1717 12076852 ~ 12081373 (+)
XLOC_025107 NA coding downstream 164557 12239692 ~ 12264458 (+)
XLOC_025108 glis2b coding downstream 247035 12322170 ~ 12335927 (+)
XLOC_025109 vasnb coding downstream 364964 12440099 ~ 12487576 (+)
XLOC_025110 ccnf coding downstream 479666 12554801 ~ 12586613 (+)
XLOC_025429 BX649540.1 misc downstream 18173604 30248739 ~ 30249036 (+)
XLOC_025099 NA non-coding upstream 686347 11386938 ~ 11388541 (+)
XLOC_025098 NA non-coding upstream 741222 11326162 ~ 11333666 (+)
XLOC_025097 NA non-coding upstream 876623 11188423 ~ 11198265 (+)
XLOC_025122 NA non-coding downstream 763559 12838694 ~ 12854479 (+)
XLOC_025125 LO018183.1 non-coding downstream 1074415 13149550 ~ 13167328 (+)
XLOC_025128 NA non-coding downstream 1285568 13360703 ~ 13367508 (+)

Expression


Co-expression Network