G570824 (LOC106575840)


Basic Information

Item Value
gene id G570824
gene name LOC106575840
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 7980758 ~ 7986344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU650643
CTTGAACGGTAAGACACGTCTGCTTGCGTCTTGATCCACTCGGGTAAACATTGAAGGAACAAATATAGCAGGCGTCGTCTGCCCATGTTACGTTCTTCACGGTAATAGACGTCGAGTTGAGAGATGCTTCCGTGAAAACCACCTTGCCTCGGTGCGGGTCTATGATTTGAGCTCCAAACCGCTTGCTGTAGGTGGCCAGATTCTCCACCGAGTCGTCTTTGAACAGCCTCTGCCAGGTGACTTGCAGCACACCTGTCGGGTCCGCATGAGTGCAGGTATATGATGCGTCGGCATTGAAGTCAACCCTGGTGTCTCCTCTAGCTACGACGTTGACAGAGACGGCTAGAAATGGAAGAAGGCAAGTTaacaggtaaataaataaaaacaagtttAGCCTACATAGAAAATAATCAATAACCTGTCAAACGTGGGAAATGTTGTTTACCTAACCCATCTCATCTTAT
>TU650644
CTTGAACGGTAAGACACGTCTGCTTGCGTCTTGATCCACTCGGGTAAACATTGAAGGAACAAATATAGCAGGCGTCGTCTGCCCATGTTACGTTCTTCACGGTAATAGACGTCGAGTTGAGAGATGCTTCCGTGAAAACCACCTTGCCTCGGTGCGGGTCTATGATTTGAGCTCCAAACCGCTTGCTGTAGGTGGCCAGATTCTCCACCGAGTCGTCTTTGAACAGCCTCTGCCAGGTGACTTGCAGCACACCTGTCGGGTCCGCATGGGTGCAGGTATATGATGCGTCGGCATTGAAGTCAACCCTGGTGTCTCCTCTAGCTACGACGTTGACAGAGACGGCTAGAAATGGAAGAAGGCAAGTTaacaggtaaataaataaaaacaagtttAGCCTACATAGAAAATAATCAATAACCTGTCAAACGTGGGAAATGTTGTTTACCTAACCCATCTCATCTTAT

Function

NR:

description
OX-2 membrane glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU650643 False 464 lncRNA 0.47 2 7980758 7986344
TU650644 True 464 lncRNA 0.47 2 7980758 7986344

Neighbor

gene id symbol gene type direction distance location
LOC110495467 LOC100653484 coding upstream 46042 7900629 ~ 7934716 (+)
LOC110525651 LOC106575849 coding upstream 80567 7895587 ~ 7900191 (+)
LOC118965232 LOC106575843 coding upstream 153661 7822703 ~ 7827097 (+)
LOC110491196 LOC106575747 coding upstream 213421 7749406 ~ 7767337 (+)
LOC110491195 NA coding upstream 232335 7747187 ~ 7748423 (+)
LOC110504762 LOC106573845 coding downstream 22588 8008932 ~ 8017366 (+)
LOC110497026 ptprn coding downstream 32089 8009587 ~ 8061480 (+)
LOC110528741 LOC106573853 coding downstream 267382 8253726 ~ 8301029 (+)
LOC110527258 cacnb4 coding downstream 492402 8478746 ~ 8503131 (+)
LOC110495575 LOC106598167 coding downstream 590395 8576739 ~ 8578039 (+)
G570776 LOC106573840 non-coding upstream 5493 7972484 ~ 7975265 (+)
G570786 NA non-coding upstream 76886 7903634 ~ 7903872 (+)
G570782 NA non-coding upstream 93674 7886770 ~ 7887084 (+)
G570840 NA non-coding downstream 12083 7998427 ~ 8007219 (+)
G570844 NA non-coding downstream 16166 8002510 ~ 8003004 (+)
G570854 NA non-coding downstream 37283 8023627 ~ 8023872 (+)
G570616 NA other upstream 493160 7487205 ~ 7487598 (+)
G570601 LOC100846954 other upstream 540010 7438559 ~ 7440748 (+)
G570541 NA other upstream 674107 7304962 ~ 7306651 (+)
G570827 LOC107379067 other downstream 76763 8063107 ~ 8071558 (+)
G570868 NA other downstream 91401 8077745 ~ 8079340 (+)
G570875 NA other downstream 97927 8084271 ~ 8085753 (+)

Expression


Co-expression Network