G570844


Basic Information

Item Value
gene id G570844
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8002510 ~ 8003004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU650680
ACGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTATGACTCCAGGTAATATCAAGCAGTAACAGCCCTGACAGTCTTACGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTACGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTATGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTACGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTATGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGAAAAGACAGTTGCATCACCTCCTTAAAAGTGTACACCGCTTTCTTCTGTGTTCTCTTGCTGTGTAAAAG
>TU650681
ACGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTATGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTACGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTATGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTACGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTATGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGAAAAGACAGTTGCATCACCTCCTTAAAAGTGTACACCGCTTTCTTCTGTGTTCTCTTGCTGTGTAAAAG
>TU650682
TGACAGTCTTACGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTACGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTACGACTCCAGGTAATATCAAGCAGTAACAGCCCTGACAGTCTTACGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGTCTTACGACTCCAGGTAACATCAAGCAGTAACAGCCCTGACAGAAAAGACAGTTGCATCACCTCCTTAAAAGTGTACACCGCTTTCTTCTGTGTTCTCTTGCTGTGTAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU650680 False 366 lncRNA 0.46 2 8002510 8003004
TU650681 False 323 lncRNA 0.46 2 8002510 8003004
TU650682 True 290 lncRNA 0.47 2 8002586 8003004

Neighbor

gene id symbol gene type direction distance location
LOC110495467 LOC100653484 coding upstream 67794 7900629 ~ 7934716 (+)
LOC110525651 LOC106575849 coding upstream 102319 7895587 ~ 7900191 (+)
LOC118965232 LOC106575843 coding upstream 175413 7822703 ~ 7827097 (+)
LOC110491196 LOC106575747 coding upstream 235173 7749406 ~ 7767337 (+)
LOC110491195 NA coding upstream 254087 7747187 ~ 7748423 (+)
LOC110504762 LOC106573845 coding downstream 5928 8008932 ~ 8017366 (+)
LOC110497026 ptprn coding downstream 15429 8009587 ~ 8061480 (+)
LOC110528741 LOC106573853 coding downstream 250722 8253726 ~ 8301029 (+)
LOC110527258 cacnb4 coding downstream 475742 8478746 ~ 8503131 (+)
LOC110495575 LOC106598167 coding downstream 573735 8576739 ~ 8578039 (+)
G570836 LOC106575840 non-coding upstream 10807 7985881 ~ 7991703 (+)
G570821 NA non-coding upstream 15036 7976933 ~ 7987474 (+)
G570824 LOC106575840 non-coding upstream 16166 7980758 ~ 7986344 (+)
G570822 NA non-coding upstream 18901 7977335 ~ 7983609 (+)
G570776 LOC106573840 non-coding upstream 27245 7972484 ~ 7975265 (+)
G570854 NA non-coding downstream 20623 8023627 ~ 8023872 (+)
G570827 LOC107379067 non-coding downstream 60103 8063107 ~ 8071558 (+)
G570869 NA non-coding downstream 76779 8079783 ~ 8080225 (+)
G570616 NA other upstream 514912 7487205 ~ 7487598 (+)
G570601 LOC100846954 other upstream 561762 7438559 ~ 7440748 (+)
G570541 NA other upstream 695859 7304962 ~ 7306651 (+)
G570868 NA other downstream 74741 8077745 ~ 8079340 (+)
G570875 NA other downstream 81267 8084271 ~ 8085753 (+)

Expression


Co-expression Network