G570827 (LOC107379067)


Basic Information

Item Value
gene id G570827
gene name LOC107379067
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8063107 ~ 8071558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU650651
caTTTTATTCAAAATGGCTGATGTGAGGCAGGAAGGTTCTTCTTGTAGCTGGGTGGAATGTGCTTACTCTATGGAATGATTTCCAATATTAGTCCGTTAAACCCTTTTTGTTGTTTTCTTACTACTTGCACTATCcgggactggtagactatattaatGTAACATCAGCAGATCAGGAGTTACGCCCTTTAGTACTCCTCTCCTTCTTCATCCTCTTCTCCGATGCTGTCAGTACCCACCTCTTCATAATCCTTCTCCAGGGCTGCCATGTCTTCTCTGGCCTCTGAGAACTCTCCCTCCTCCATGCCCTCTCCCACATACCAGTGCACAAAGGCTCTCTTGGCGTACATCAGGTCAAACTTGTGGTCAAGCCTGGCCCAGGCCTCAGCGATGGCGGTGGTGTTGCTCAGCATACACACAGCTCTCTGGACCTTGGCCAGATCTCCTCCAGGGACCACTGTGGGTGGCTGGTAGTTGATACCGACCTTGAAGCCAGTGGGACACCAGTCCACAAACTGGATGGTGCGCTTGGTCTTGATGGTGGCGATGGCAGAGTTGACATCTTTGGGCACAACGTCACCACGGTAGAGCAGGCAGCAGGCCATGTACTTGCCGTGACGTGGGTCACATTTCACCATCTGATTGGCTGGCTCAAAGCAGGCGTTGGTGATGTCAGCAACAGACAGCTGCTCATGGTAGGCCTTCTCAGCAGAGATGACTGGAGCATAGGTGGCCAGAGGGAAGTGGATACGGGGGTAAGGCACCAAGTtggtctggaactctgtcaggtccacattgaGAGCTCCATCGAAACGCAGGGAGGCGGTGATGGAGGAGACgatctgaccaatcagcctgttgaGGTTGGTGTAGGTGGGGCGCTCAATGTCCAGGTTCCTGCGGCAGATATCATAGATGGCCTCATTGTCCACCATGAAGGCACAGTCCGAGTGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTATAAGGCTCCACCACAGCAGTGGACACCTGGGGAGCTGGATAGATGGCAAACTCAAGCTTGGACTTCTTCCCATAGTCGACAGAGAGACGTTCCATCAGCAGGGAGGTGAACCCAGAGCCGGTGCCTCCTCCAAAGCTGTGGAAGATCAGGAAGCCCTGGAGACCAGTGCACTGGTCAGC
>TU650652
caTTTTATTCAAAATGGCTGATGTGAGGCAGGAAGGTTCTTCTTGTAGCTGGGTGGAATGTGCTTACTCTATGGAATGATTTCCAATATTAGTCCGTTAAACCCTTTTTGTTGTTTTCTTACTACTTGCACTATCcgggactggtagactatattaatGTAACATCAGCAGATCAGGAGTTACGCCCTTTAGTACTCCTCTCCTTCTTCATCCTCTTCTCCGATGCTGTCAGTACCCACCTCTTCATAATCCTTCTCCAGGGCTGCCATGTCTTCTCTGGCCTCTGAGAACTCTCCCTCCTCCATGCCCTCTCCCACATACCAGTGCACAAAGGCTCTCTTGGCGTACATCAGGTCAAACTTGTGGTCAAGCCTGGCCCAGGCCTCAGCGATGGCGGTGGTGTTGCTCAGCATACACACAGCTCTCTGGACCTTGGCCAGATCTCCTCCAGGGACCACTGTGGGTGGCTGGTAGTTGATACCGACCTTGAAGCCAGTGGGACACCAGTCTACAAACTGGATGGTGCGCTTGGTCTTGATGGTGGCAATGGCAGAGTTGACATCTTTGGGCACAACGTCACCACGGTAGAGCAGGCAGCAGGCCATGTACTTGCCGTGACGTGGGTCACATTTCACCATCTGATTGGCTGGCTCAAAGCAGGCGTTGGTGATCTCAGCCACTGATAGCATCTCGTGATAGGCCTTCTCAGCAGAGATGACTGGAGCATAGGTGGCCAGAGGGAAGTGGATACGGGGGTAGGGCACCAAGTtggtctggaactctgtcaggtccacattgaGAGCTCCATCGAAACGCAGGGAGGCGGTGATGGAGGAGACGATCTGACCAATCAGTCTGTTGAGGTTGGTGTAGGTGGGGCGCTCAATGTCCAGGTTCCTGCGGCAGATATCATAGATGGCCTCATTGTCCACCATGAAGGCACAGTCCGAGTGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTATAAGGCTCCACCACAGCAGTGGACACCTGGGGAGCTGGATAGATGGCAAACTCAAGCTTGGACTTCTTCCCATAGTCGACAGAGAGACGTTCCATCAGCAGGGAGGTGAACCCAGAGCCGGTGCCTCCTCCAAAGCTGTGGAAGATCAGGAAGCCCTGGAGACCAGTGCACTGGTCAGC
>TU650653
caTTTTATTCAAAATGGCTGATGTGAGGCAGGAAGGTTCTTCTTGTAGCTGGGTGGAATGTGCTTACTCTATGGAATGATTTCCAATATTAGTCCGTTAAACCCTTTTTGTTGTTTTCTTACTACTTGCACTATCcgggactggtagactatattaatGTAACATCAGCAGATCAGGAGTTACGCCCTTTAGTACTCCTCTCCTTCTTCATCCTCTTCTCCGATGCTGTCAGTACCCACCTCTTCATAATCCTTCTCCAGGGCTGCCATGTCTTCTCTGGCCTCTGAGAACTCTCCCTCCTCCATGCCCTCTCCCACATACCAGTGCACAAAGGCTCTCTTGGCGTACATCAGGTCAAACTTGTGGTCAAGCCTGGCCCAGGCCTCAGCGATGGCGGTGGTGTTGCTCAGCATACACACAGCTCTCTGGACCTTGGCCAGATCTCCTCCAGGGACCACTGTGGGTGGCTGGTAGTTGATACCGACCTTGAAGCCAGTGGGACACCAGTCCACAAACTGGATGGTGCGCTTGGTCTTGATGGTGGCGATGGCAGAGTTGACATCTTTGGGCACAACGTCACCACGGTAGAGCAGGCAGCAGGCCATGTACTTGCCGTGACGTGGGTCACATTTCACCATCTGATTGGCTGGCTCAAAGCAGGCGTTGGTGATGTCAGCAACAGACAGCTGCTCATGGTAGGCCTTCTCAGCAGAGATGACTGGAGCATAGGTGGCCAGAGGGAAGTGGATACGGGGGTAAGGCACCAAGTtggtctggaactctgtcaggtccacattgaGAGCTCCATCGAAACGCAGGGAGGCGGTGATGGAGGAGACgatctgaccaatcagcctgttgaGGTTGGTGTAGGTGGGGCGCTCAATGTCCAGGTTCCTGCGGCAGATATCATAGATGGCCTCATTGTCCACCATGAAGGCACAGTCCGAGTGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTGTAAGGCTCCACCACAGCAGTCGAAACTTGGGGAGCAGGGTAAACAGCAAACTCAAGCTTGGACTTCTTCCCATAGTCGACAGAGAGACGTTCCATCAGCAGAGAGGTGAACCCAGAGCCGGTGCCTCCTCCAAAGCTGTGGAAGATCAGGAAGCCCTGGAGACCAGTGCACTGGTCAGC
>TU650655
caTTTTATTCAAAATGGCTGATGTGAGGCAGGAAGGTTCTTCTTGTAGCTGGGTGGAATGTGCTTACTCTATGGAATGATTTCCAATATTAGTCCGTTAAACCCTTTTTGTTGTTTTCTTACTACTTGCACTATCcgggactggtagactatattaatGTAACATCAGCAGATCAGGAGTTACGCCCTTTAGTACTCCTCTCCTTCTTCATcctcgtcCCCTACACTGTCAGTACCCACCTCTTCATAATCCTTCTCCAGGGCTGCCATGTCTTCTCTGGCCTCTGAGAACTCTCCCTCCTCCATGCCCTCTCCCACATACCAGTGCACAAAGGCTCTCTTGGCGTACATCAGGTCAAACTTGTGGTCAAGCCTGGCCCAGGCCTCAGCGATGGCGGTGGTGTTGCTCAGCATACACACAGCTCTCTGGACCTTGGCCAGATCTCCTCCAGGGACCACTGTGGGTGGCTGGTAGTTGATACCGACCTTGAAGCCAGTGGGACACCAGTCTACAAACTGGATGGTGCGCTTGGTCTTGATGGTGGCAATGGCAGAGTTGACATCTTTGGGCACAACGTCACCACGGTAGAGCAGGCAGCAGGCCATGTACTTGCCGTGACGTGGGTCACATTTCACCATCTGATTGGCTGGCTCAAAGCAGGCGTTGGTGATCTCAGCCACTGATAGCATCTCGTGATAGGCCTTCTCAGCAGAGATGACTGGAGCATAGGTGGCCAGAGGGAAGTGGATACGGGGGTAGGGCACCAAGTtggtctggaactctgtcaggtccacattgaGAGCTCCATCGAAACGCAGGGAGGCGGTGATGGAGGAGACGATCTGACCAATCAGTCTGTTGAGGTTGGTGTAGGTGGGGCGCTCAATGTCCAGGTTCCTGCGGCAGATATCATAGATGGCCTCATTGTCCACCATGAAGGCACAGTCCGAGTGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTATAAGGCTCCACCACAGCAGTGGACACCTGGGGAGCTGGATAGATGGCAAACTCAAGCTTGGACTTCTTCCCATAGTCGACAGAGAGACGTTCCATCAGCAGGGAGGTGAACCCAGAGCCGGTGCCTCCTCCAAAGCTGTGGAAGATCAGGAAGCCCTGGAGACCAGTGCACTGGTCAGC
>TU650656
caTTTTATTCAAAATGGCTGATGTGAGGCAGGAAGGTTCTTCTTGTAGCTGGGTGGAATGTGCTTACTCTATGGAATGATTTCCAATATTAGTCCGTTAAACCCTTTTTGTTGTTTTCTTACTACTTGCACTATCcgggactggtagactatattaatGTAACATCAGCAGATCAGGAGTTACGCCCTTTAGTACTCCTCTCCTTCTTCATCCTCTTCTCCGATGCTGTCAGTACCCACCTCTTCATAATCCTTCTCCAGGGCTGCCATGTCTTCTCTGGCCTCTGAGAACTCTCCCTCCTCCATGCCCTCTCCCACATACCAGTGCACAAAGGCTCTCTTGGCGTACATCAGGTCAAACTTGTGGTCAAGCCTGGCCCAGGCCTCAGCGATGGCGGTGGTGTTGCTCAGCATACACACAGCTCTCTGGACCTTGGCCAGATCTCCTCCAGGGACCACTGTGGGTGGCTGGTAGTTGATACCGACCTTGAAGCCAGTGGGACACCAGTCCACAAACTGGATGGTGCGCTTGGTCTTGATGGTGGCGATGGCAGAGTTGACATCTTTGGGCACAACGTCACCACGGTAGAGCAGGCAGCAGGCCATGTACTTGCCGTGACGTGGGTCACATTTCACCATCTGATTGGCTGGCTCAAAGCAGGCGTTGGTGATGTCAGCAACAGACAGCTGCTCATGGTAGGCCTTCTCAGCAGAGATGACTGGAGCATAGGTGGCCAGAGGGAAGTGGATACGGGGGTAGGGCACCAAGTtggtctggaactctgtcaggtccacattgaGAGCTCCATCGAAACGCAGGGAGGCGGTGATGGAGGAGACGATCTGACCAATCAGTCTGTTGAGGTTGGTGTAGGTGGGGCGCTCAATGTCCAGGTTCCTGCGGCAGATATCATAGATGGCCTCATTGTCCACCATGAAGGCACAGTCCGAGTGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTATAAGGCTCCACCACAGCAGTGGACACCTGGGGAGCTGGATAGATGGCAAACTCAAGCTTGGACTTCTTCCCATAGTCGACAGAGAGACGTTCCATCAGCAGGGAGGTGAACCCAGAGCCGGTGCCTCCTCCAAAGCTGTGGAAGATCAGGAAGCCCTGGAGACCAGTGCACTGGTCAGC
>TU650657
caTTTTATTCAAAATGGCTGATGTGAGGCAGGAAGGTTCTTCTTGTAGCTGGGTGGAATGTGCTTACTCTATGGAATGATTTCCAATATTAGTCCGTTAAACCCTTTTTGTTGTTTTCTTACTACTTGCACTATCcgggactggtagactatattaatGTAACATCAGCAGATCAGGAGTTACGCCCTTTAGTACTCCTCTCCTTCTTCATCCTCTTCTCCGATGCTGTCAGTACCCACCTCTTCATAATCCTTCTCCAGGGCTGCCATGTCTTCTCTGGCCTCTGAGAACTCTCCCTCCTCCATGCCCTCTCCCACATACCAGTGCACAAAGGCTCTCTTGGCGTACATCAGGTCAAACTTGTGGTCAAGCCTGGCCCAGGCCTCAGCGATGGCGGTGGTGTTGCTCAGCATACACACAGCTCTCTGGACCTTGGCCAGATCTCCTCCAGGGACCACTGTGGGTGGCTGGTAGTTGATACCGACCTTGAAGCCAGTGGGACACCAGTCCACAAACTGGATGGTGCGCTTGGTCTTGATGGTGGCGATGGCAGAGTTGACATCTTTGGGCACAACGTCACCACGGTAGAGCAGGCAGCAGGCCATGTACTTGCCGTGACGTGGGTCACATTTCACCATCTGATTGGCTGGCTCAAAGCAGGCGTTGGTGATGTCAGCAACAGACAGCTGCTCATGGTAGGCCTTCTCAGCAGAGATGACTGGAGCATAGGTGGCCAGAGGGAAGTGGATACGGGGGTAAGGCACCAAGTtggtctggaactctgtcaggtccacattgaGAGCTCCATCGAAACGCAGGGAGGCGGTGATGGAGGAGACgatctgaccaatcagcctgttgaGGTTGGTGTAGGTGGGGCGCTCAATGTCCAGGTTCCTGCGGCAGATATCATAGATGGCCTCATTGTCCACCATGAAGGCACAGTCCGAGTGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTATAAGGCTCCACCACAGCAGTGGACACCTGGGGAGCTGGATAGATGGCAAACTCAAGCTTGGACTTCTTCCCATAGTCGACAGAGAGACGTTCCATCAGCAGGGAGGTGAACCCAGAGCCGGTGCCTCCTCCAAAGCTGTGGAAGATCAGGAAGCCCTGGAGACCAGTGCACTGGTCAGC
>TU650658
TCATAGATGGCCTCATTGTCCACCATGAAGGCACAGTCCGAGTGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTGTAAGGCTCCACCACAGCAGTAGAAACTTGGGGAGCAGGGTAAACAGCAAACTCAAGCTTGGACTTCTTCCCATAGTCGACAGAGAGACGTTCCATCAGCAGGGAGGTGAACCCAGAGCCGGTGCCTCCTCCAAAGCTGTGGAAGATCAGGAAGCCCTGGAGACCAGTGCACTGGTCAGC

Function

NR:

description
PREDICTED: tubulin alpha-1C chain-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU650651 False 1166 TUCP 0.53 2 8063107 8071558
TU650652 False 1166 lncRNA 0.53 2 8063107 8071558
TU650653 False 1166 TUCP 0.53 2 8063107 8071558
TU650655 False 1166 lncRNA 0.53 2 8063107 8071558
TU650656 False 1166 TUCP 0.53 2 8063107 8071558
TU650657 False 1166 TUCP 0.53 2 8063107 8071558
TU650658 True 257 lncRNA 0.56 2 8067580 8071558

Neighbor

gene id symbol gene type direction distance location
LOC110497026 ptprn coding upstream 2272 8009587 ~ 8061480 (+)
LOC110504762 LOC106573845 coding upstream 45741 8008932 ~ 8017366 (+)
LOC110495467 LOC100653484 coding upstream 128391 7900629 ~ 7934716 (+)
LOC110525651 LOC106575849 coding upstream 162916 7895587 ~ 7900191 (+)
LOC118965232 LOC106575843 coding upstream 236010 7822703 ~ 7827097 (+)
LOC110528741 LOC106573853 coding downstream 182168 8253726 ~ 8301029 (+)
LOC110527258 cacnb4 coding downstream 407188 8478746 ~ 8503131 (+)
LOC110495575 LOC106598167 coding downstream 505181 8576739 ~ 8578039 (+)
LOC110496917 LOC106595105 coding downstream 513475 8585033 ~ 8586714 (+)
LOC118965341 LOC106575870 coding downstream 518823 8590381 ~ 8592862 (+)
G570854 NA non-coding upstream 39235 8023627 ~ 8023872 (+)
G570840 NA non-coding upstream 55888 7998427 ~ 8007219 (+)
G570844 NA non-coding upstream 60103 8002510 ~ 8003004 (+)
G570869 NA non-coding downstream 8225 8079783 ~ 8080225 (+)
G570870 NA non-coding downstream 8812 8080370 ~ 8080853 (+)
G570871 NA non-coding downstream 9360 8080918 ~ 8081428 (+)
G570872 NA non-coding downstream 9951 8081509 ~ 8081812 (+)
G570873 NA non-coding downstream 10674 8082232 ~ 8082531 (+)
G570616 NA other upstream 575509 7487205 ~ 7487598 (+)
G570868 NA other downstream 6187 8077745 ~ 8079340 (+)
G570875 NA other downstream 12713 8084271 ~ 8085753 (+)
G570834 NA other downstream 68724 8140282 ~ 8140762 (+)
G572315 NA other downstream 578422 8649980 ~ 8650898 (+)
G572476 NA other downstream 850777 8922335 ~ 8922794 (+)

Expression


Co-expression Network