XLOC_025107


Basic Information

Item Value
gene id XLOC_025107
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12239692 ~ 12264458 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052614
GCACACATGCGCTGAGCTGGCAGAGCCGCCGTCAGTCCGCGCTGATCCTCCGCCCGCTGCGCccgaggagaggagaggagactCGGACAGGCTCGCGTCCGGGGTGCTGGAGACCCACCTCACCCAACACTGTCTCCACGGACATTATTGAAGCCCTAAGACTGGACACGACCGCAAACACGACACGGAGACACCATCCGGACACGAAGCTGAAAAGGGGACGTCTCCTCTCCAtcgcctttttattttttatttgcgcACGACCACCCATTAAAACCCCCTCTGGACCGGCAAGCGATGCACCTTGATGCCAAGACGACGATCACTGCGATCAATGTgtgtggtttttgttttgttttgttttagtgctTAATTGTTAATCGAGAGGGACACAACGGACACTGTTCTCGGTGTTGACACATGCATTAAACGGGTTTCACTGGTTCAAGAGGAGACCTTCATGGCCTGAAACTGACAGAAACTGATCAACCGCATTTACTGGGCTTTTCTTTGGGTAGTTTTGTGCTTTTTTGCAACACTGTCATGCGTGTCCAGACAACAGTCTGATGCTTTCAGACGGCGCTAGATTATTATTCAGCCACTGGTGACAGTGCCCTACAGGTCCTTCTGCATAATCTGCTGGGCCCTTCCTTAAACAAGAAAAAACTGAGTCGTTATTTTGCAATCCCAAGGAATTGGAGCAAACAGTCCCCCTGGAAAGTTTAAGGTGGAGACCAGCGTTCGGCTATCAGATATATCCAGGAGGTTCCACTGAAGGTGGTGGAAAGCAAAAGGAGGAAGGAGATCAGCAG

Function

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:0022610 biological adhesion biological_process
GO:0072359 circulatory system development biological_process
GO:0035295 tube development biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0001525 angiogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0001568 blood vessel development biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0001666 response to hypoxia biological_process
GO:0001944 vasculature development biological_process
GO:0007155 cell adhesion biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0005391 sodium molecular_function
GO:0008201 heparin binding molecular_function
GO:0098634 cell-matrix adhesion mediator activity molecular_function
GO:0098639 collagen binding involved in cell-matrix adhesion molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0030234 enzyme regulator activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0019960 C-X3-C chemokine binding molecular_function
GO:0050840 extracellular matrix binding molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052614 True 812 lncRNA 0.51 2 12239692 12264458

Neighbor

gene id symbol gene type direction distance location
XLOC_025106 NA coding upstream 158319 12076852 ~ 12081373 (+)
XLOC_025105 NA coding upstream 164557 12074888 ~ 12075135 (+)
XLOC_025104 dnaja3a coding upstream 292020 11926030 ~ 11947672 (+)
XLOC_025103 NA coding upstream 380889 11855320 ~ 11858803 (+)
XLOC_025101 CABZ01087224.1 coding upstream 652083 11568523 ~ 11587609 (+)
XLOC_025108 glis2b coding downstream 57712 12322170 ~ 12335927 (+)
XLOC_025109 vasnb coding downstream 175641 12440099 ~ 12487576 (+)
XLOC_025110 ccnf coding downstream 290343 12554801 ~ 12586613 (+)
XLOC_025111 abca3b coding downstream 329100 12593558 ~ 12699905 (+)
XLOC_025112 cyp2k18 coding downstream 445892 12710350 ~ 12715432 (+)
XLOC_025429 BX649540.1 misc downstream 17984281 30248739 ~ 30249036 (+)
XLOC_025102 NA non-coding upstream 658972 11576675 ~ 11580720 (+)
XLOC_025099 NA non-coding upstream 851151 11386938 ~ 11388541 (+)
XLOC_025122 NA non-coding downstream 574236 12838694 ~ 12854479 (+)
XLOC_025125 LO018183.1 non-coding downstream 885092 13149550 ~ 13167328 (+)
XLOC_025128 NA non-coding downstream 1096245 13360703 ~ 13367508 (+)
XLOC_025129 NA non-coding downstream 1125404 13389862 ~ 13406082 (+)
XLOC_025130 dre-mir-23a-2 non-coding downstream 1141768 13406226 ~ 13406323 (+)

Expression


Co-expression Network