XLOC_025108 (glis2b)


Basic Information

Item Value
gene id XLOC_025108
gene name glis2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12322170 ~ 12335927 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049629
ATGCTGTCCTTAGACGAGCCACTGGACCTGAAGGTGCCGAGGGGGTGGATCAGTGGGCGGGACAGAGGCGCCAGGTCACCGCCTACTCTCAGTTCCTCTCCAATCCACGGCAAGGGGGCGGGGCAGCTGCGAATGGCAGACGACGGCACTGCAGTCATCGTTCCAGCGTCCCCTGCATCGCCACACACAGGTGTCTTACGGAGTAACTTGGAGACCCCCACACCACCGGCTGTGGACCTCAGCCTGTCCCCGTCCTCCCGAAACACTGCCTGCTCCCCAGAGCTCTCCAACGGCAGTGGATCAGCTCCTGTTTTCCCCGGGGACTCAGCTCATATCCGCTATGTTGAAGGAGGAGCCACATCTCAAGCATTCCAGTTCTTTGTGCCCATCGGAGCAGGAGGAGGCCTTCACCTGCCCTCGTCCATGTTTATTCGGCAGCCTAAAGACACCAGAGCTTCTCCAGATCTTTCCGCAGATGAACAGCTGGCCTGTCGCTGGAGGAAGTGCCACCTACTTTTCGACTCCTTGCAAGACCTGGTGGATCATGTCAACGACTTCCATGTGAAGCCAGAGAAGGATTCTGGCTACTGTTGCCACTGGGAAGGGTGTGCACGCAAAGGACGGGGGTTTAATGCCAGGTACAAGATGCTGATTCACATCCGTACTCACACCAATGAGAAACCTCACCGCTGTCCCACCTGCAATAAGAGCTTCTCCCGACTGGAAAACCTCAAGATTCACAACCGCTCACACACAGGTGAGAAGCCCTACATCTGCCCTTACGAAGGCTGCAATAAACGCTACTCCAATTCCAGCGACCGgttcaaacacacacgcacgcactatGTGGACAAGCCCTACTACTGCAAGATGGTGGGATGCTTGAAACGCTACACGGACCCCAGCTCCCTGAGGAAGCATATCAAGGCTCATGGGCACTTTGTAGCCCAGGAGCAGGGAGGTGGGGTGGGCTCGTTGATAAAGCAGAGCCAGATTGCTGGGGTGGGGAAAGATTCGGAGCTGACTTATGTCAGCGGGGCTCACATCATCATTCCTAGTGCTGCCGCTGCTCTCCTTGGTGGTCACGCTCTGCAGGGTCTCGGAGGCTCCCTCCCGCTGTCCCCCCTCAGTCCCCGCCCCTTGGACTTGAGCACACTTGGCTGCCCAAACTCCCCTACTGCTGGGCTTGGAGGGACACCTATTCTGTCCTTCAGCAGTTCCCCTCTAGGCCTGACCAAGTCACCTTTGCTGTCTCCTTCCTTTTCATCTTCCACGCTTGGGTTACCCATGCTGCCCATCCTGGGCTCTGAGCGCAGGGACCATGGCAAGGGCAAGATCAGAGGAGAGGAGGGCGAGGATGAGATCCACGGTGGTGTACTCAACCTGTCTACGGGAGCATCCCACGACCCCCTGTCTTGGGTGGTCATCCCCTCTGGCCCAGTTGTGCTGAAGCCAGCTGTGGTCAACTGA
>TCONS_00049630
CAAGAGCTCATTGTGGATGTTGCTTTCACAGTGCCACCTACTTTTCGACTCCTTGCAAGACCTGGTGGATCATGTCAACGACTTCCATGTGAAGCCAGAGAAGGATTCTGGCTACTGTTGCCACTGGGAAGGGTGTGCACGCAAAGGACGGGGGTTTAATGCCAGGTACAAGATGCTGATTCACATCCGTACTCACACCAATGAGAAACCTCACCGCTGTCCCACCTGCAATAAGAGCTTCTCCCGACTGGAAAACCTCAAGATTCACAACCGCTCACACACAGGTGAGAAGCCCTACATCTGCCCTTACGAAGGCTGCAATAAACGCTACTCCAATTCCAGCGACCGgttcaaacacacacgcacgcactatGTGGACAAGCCCTACTACTGCAAGATGGTGGGATGCTTGAAACGCTACACGGACCCCAGCTCCCTGAGGAAGCATATCAAGGCTCATGGGCACTTTGTAGCCCAGGAGCAGGGAGGTGGGGTGGGCTCGTTGATAAAGCAGAGCCAGATTGCTGGGGTGGGGAAAGATTCGGAGCTGACTTATGTCAGCGGGGCTCACATCATCATTCCTAGTGCTGCCGCTGCTCTCCTTGGTGGTCACGCTCTGCAGGGTCTCGGAGGCTCCCTCCCGCTGTCCCCCCTCAGTCCCCGCCCCTTGGACTTGAGCACACTTGGCTGCCCAAACTCCCCTACTGCTGGGCTTGGAGGGACACCTATTCTGTCCTTCAGCAGTTCCCCTCTAGGCCTGACCAAGTCACCTTTGCTGTCTCCTTCCTTTTCATCTTCCACGCTTGGGTTACCCATGCTGCCCATCCTGGGCTCTGAGCGCAGGGACCATGGCAAGGGCAAGATCAGAGGAGAGGAGGGCGAGGATGAGATCCACGGTGGTGTACTCAACCTGTCTACGGGAGCATCCCACGACCCCCTGTCTTGGGTGGTCATCCCCTCTGGCCCAGTTGTGCTGAAGCCAGCTGTGGTCAACTGAGCACCACATTCCAG

Function

symbol description
glis2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cilium movement; left/right pattern formation; and morphogenesis of an epithelium. Predicted to be active in nucleus. Is expressed in eye; gut; heart; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in nephronophthisis 7. Orthologous to human GLIS2 (GLIS family zinc finger 2).

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0060972 left/right pattern formation biological_process
GO:0039023 pronephric duct morphogenesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007417 central nervous system development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-120 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cilium movement; left/right pattern formation; and morphogenesis of an epithelium. Predicted to be active in nucleus. Is expressed in eye; gut; heart; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in nephronophthisis 7. Orthologous to human GLIS2 (GLIS family zinc finger 2).

Ensembl:

ensembl_id ENSDARG00000100232

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049629 False 1470 mRNA 0.58 6 12322170 12335913
TCONS_00049630 True 1011 mRNA 0.56 3 12334509 12335927

Neighbor

gene id symbol gene type direction distance location
XLOC_025107 NA coding upstream 57712 12239692 ~ 12264458 (+)
XLOC_025106 NA coding upstream 240797 12076852 ~ 12081373 (+)
XLOC_025105 NA coding upstream 247035 12074888 ~ 12075135 (+)
XLOC_025104 dnaja3a coding upstream 374498 11926030 ~ 11947672 (+)
XLOC_025103 NA coding upstream 463367 11855320 ~ 11858803 (+)
XLOC_025109 vasnb coding downstream 104172 12440099 ~ 12487576 (+)
XLOC_025110 ccnf coding downstream 218874 12554801 ~ 12586613 (+)
XLOC_025111 abca3b coding downstream 257631 12593558 ~ 12699905 (+)
XLOC_025112 cyp2k18 coding downstream 374423 12710350 ~ 12715432 (+)
XLOC_025113 cyp2k20 coding downstream 382173 12718100 ~ 12730554 (+)
XLOC_025429 BX649540.1 misc downstream 17912812 30248739 ~ 30249036 (+)
XLOC_025102 NA non-coding upstream 741450 11576675 ~ 11580720 (+)
XLOC_025122 NA non-coding downstream 502767 12838694 ~ 12854479 (+)
XLOC_025125 LO018183.1 non-coding downstream 813623 13149550 ~ 13167328 (+)
XLOC_025128 NA non-coding downstream 1024776 13360703 ~ 13367508 (+)
XLOC_025129 NA non-coding downstream 1053935 13389862 ~ 13406082 (+)
XLOC_025130 dre-mir-23a-2 non-coding downstream 1070299 13406226 ~ 13406323 (+)

Expression


Co-expression Network