G570949 (LOC106573852)


Basic Information

Item Value
gene id G570949
gene name LOC106573852
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8241899 ~ 8244111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU650801
CCACAACACTGTCATATCTAGCAGTCACACCGTGCCTTAATGTCCCACAACACTGTCATATCTAGCAGCACTGGGAATCTCACATATTACACACCTTTCAAAAATGACAGAAATTCAGACAGAACACAAGAACATTTAAAATTGTTCCTTGAATGAAAGAACCGACTTCAAACGGAGGTACCAGAGCCCCTGTAGAACGTCTGCTGCCCCTGTGTATAACGTCTGCTGCTCCTGTGTAGAACGTCTGCTGCCCCTGTATAACGTCTGCTGCCCCTGTGTATAACGTCTGCTGCTCCTGTGTATAACGTCTGCTGCTCCTGTATAACGTCTGCTGCTCCTGTGTATAACGTCTGCTACCCCTGTGTATAACGTCTGCTGCTCCTGTATAACGTCTGCTGCTCCTGTGTATAACGTCTGCTGCTCCTGTGTATAACGTCTGCTGCCCCTGTGTATAACGTCTGCTGCTCCTGTGTATAACGTCTGCTGCTCCTGTGTATAACGTCTgctgctcctgtgtgtgtgtgtctcacttgCATtcggtgtgtgtgttgttgtgtgtgtgcgttgcgTTGCGTTCGGTGTGTGTGTTGCGTtcggtgtgtgtgttgttgtgtgtgtgtgttgcgttgcGTTCGGTGTGTGTGTTGCGTTCGGTGTGTCTGCACACGTGTATGTCTCACCTGCAGTCGGGCTGCTGTTGCAGACACAGCTGGACCAGGTTGTGCAGGGTGACCGAGTGGTTCTTGGGGGCGGGGCTCTGAGGTCTCTCGGCGGTGGCGGTGCGGGTCAGGCTGCCCGTGGCAACACTCTCCCCGATGCCAGAGTCCACCCCGGAGCGGGACACCTTCAGCCCCCTCAGCTCCCCTATGGGGgagggggccacgtccagcaggCAGCAGTGGGACCCACGCAGCTTCTGGAGCAG

Function

NR:

description
STE20-related kinase adapter protein beta isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU650801 True 925 lncRNA 0.54 2 8241899 8244111

Neighbor

gene id symbol gene type direction distance location
LOC110497026 ptprn coding upstream 181064 8009587 ~ 8061480 (+)
LOC110504762 LOC106573845 coding upstream 224533 8008932 ~ 8017366 (+)
LOC110495467 LOC100653484 coding upstream 307183 7900629 ~ 7934716 (+)
LOC110525651 LOC106575849 coding upstream 341708 7895587 ~ 7900191 (+)
LOC118965232 LOC106575843 coding upstream 414802 7822703 ~ 7827097 (+)
LOC110528741 LOC106573853 coding downstream 9615 8253726 ~ 8301029 (+)
LOC110527258 cacnb4 coding downstream 234635 8478746 ~ 8503131 (+)
LOC110495575 LOC106598167 coding downstream 332628 8576739 ~ 8578039 (+)
LOC110496917 LOC106595105 coding downstream 340922 8585033 ~ 8586714 (+)
LOC118965341 LOC106575870 coding downstream 346270 8590381 ~ 8592862 (+)
G570948 NA non-coding upstream 997 8239334 ~ 8240902 (+)
G570942 NA non-coding upstream 12692 8228830 ~ 8229207 (+)
G570941 NA non-coding upstream 13388 8227958 ~ 8228511 (+)
G570939 NA non-coding upstream 15450 8226220 ~ 8226449 (+)
G570938 NA non-coding upstream 16239 8225368 ~ 8225660 (+)
G570960 NA non-coding downstream 12419 8256530 ~ 8256729 (+)
G570963 NA non-coding downstream 18904 8263015 ~ 8264108 (+)
G570964 NA non-coding downstream 20239 8264350 ~ 8264946 (+)
G572041 NA non-coding downstream 86776 8330887 ~ 8331205 (+)
G572043 NA non-coding downstream 89372 8333483 ~ 8333806 (+)
G570834 NA other upstream 101137 8140282 ~ 8140762 (+)
G570875 NA other upstream 156146 8084271 ~ 8085753 (+)
G570868 NA other upstream 162559 8077745 ~ 8079340 (+)
G570827 LOC107379067 other upstream 170341 8063107 ~ 8071558 (+)
G572315 NA other downstream 405869 8649980 ~ 8650898 (+)
G572476 NA other downstream 678224 8922335 ~ 8922794 (+)
G572449 NA other downstream 685998 8930109 ~ 8933878 (+)
LOC110497049 LOC106575743 other downstream 1722556 9879599 ~ 9980430 (+)
G573366 NA other downstream 1884010 10128121 ~ 10132016 (+)

Expression


Co-expression Network