XLOC_025113 (cyp2k20)


Basic Information

Item Value
gene id XLOC_025113
gene name cyp2k20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12718100 ~ 12730554 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049638
AGGCAAGGTCCCTCCTCCATATAGCAGCTATAAAATTACTGAGTACATCAGTTGCGAAGCTCAGAAAGAAAATGGCTGTTGTCGAGTCACTTCTGCAGTTTGCCAGCACAAGTGCATTGCTGGGAGCTTTGCTGTTGTTACTGGTTTTATATCTAGCTTCATCTGGATCCACATCTCAGAAAGAAGGGAAAGAGCCGCCGGGACCCAAACCACTGCCACTGGTGGGAAACCTGCTGACCCTTGACCTCACAAGATCCTTTGACACTTTTTTTGAGCTGTCCAAAACGTATGGAAATATATTCCAAGTATTTTTGGGACACAGAAAAACTGTAGTCCTAGTTGGATACAAAACTGTAAAAGAAGCGCTTGTGAACTACGCTGAAGTGTTCGGTGATCGAGAGATTGGACCTGGTTTCAAGTTGAAGGATGAAGAACATGGAATCCTCTTTTCCAATGGAGAGAACTGGAAAGAGATGCGACGCTTCGCTCTCAGCAACCTGCGGGACTTTGGGATGGGCAAAAGAGGAAGTGAAGAGAAAATCATTGAAGAAATTCATCATCTCAAAGGAGAATTTGATAAGTTTGAAGGGAAACCCTTTGACACAACACAGCCTGTGAACTACGCTGTGTCAAACATCATCTCGTCTATTGTGTACGGCAGCAGATTTGAATACATAGACCCTCGTTTCACAGAAATGGTTGCTAGAGCAAATGAAAATGTTCGAGTTGGTGGATCGTTTTCTATGATGatttacaATATATTTCCCTGGTTGGGTCCATTTTTGAAAAATAGAGCAGTTGTTGTAAAGAACATCACTCAAAATAGAGCAGAAAAGAAAAAGTTGATCACTGCTCTTCTGGAGACTCTGAATCCACATGACCCCAGAGGGTTTGTCGACTCCTTTCTCATCCACAAACTGAGCGATGAGAAATCTGGTAAGAAGGACTCGTACTTTCATGAGGAGAATCTGATGCTGACTGTTGCAAATCTGTTTGCTGCTGGTACTGACACCACAGGAACAACTCTGCGCTGGGGTCTGATGCTCATGGCCAAATACCCTCATATTCAAGATCGGGTTCAAGAGGAAATTGACAGAGTAATTGGTGGACGTCAGCCAGTGGTGGATGACAGGAAGAAATTACCATATACAGATGCTGTCATTCATGAAATTCAGAGACTGGCCAACATTGTGCCTTTGAGTCTTCCACATAGAACTACCAGTGACATTACCTTCAATGGATACTTCATCAAGAAGGGAACTACAGTTGTTCCTCTGCTGACGTCTGTTCTGAAGGATGAAAGTGAATGGGAGAAACCAAACAGCTTTTACCCAGAACACTTCCTTGATGAGAAGGGCCAGTTCGTCAAGAGAGACGCTTTCATGCCCTTCTCTGCAGgGCGCAGGGTTTGTCTGGGAGAGAGTTTGGCCAGGATGGAGCTCTTCCTGTTCTTCACGTCTCTCCTTCAGAGCTACCGCTTCACAACTCCACCCGGAGTGTCTGAAGATGCGCTGGATCTCAAAGGAATCGTTGGAATCACGTTGAATCCGTCTCCACACAAGCTGTGTGCAATCAGACGCTCCTGATTCAGGAAAGCATCAGCAGCTAAcggaaaaatacacaaaacaaagcTTCTCAGATTATTTCAGCATGA
>TCONS_00049639
ATGGCTGTTGTCGAGTCACTTCTGCAGTTTGCCAGCACAAGTGCATTGCTGGGAGCTTTGCTGTTGTTACTGGTTTTATATCTAGCTTCATCTGGATCCACATCTCAGAAAGAAGGGAAAGAGCCGCCGGGACCCAAACCACTGCCACTGGTGGGAAACCTGCTGACCCTTGACCTCACAAGATCCTTTGACACTTTTTTTGAGCTGTCCAAAACGTATGGAAATATATTCCAAGTATTTTTGGGACACAGAAAAACTGTAGTCCTAGTTGGATACAAAACTGTAAAAGAAGCGCTTGTGAACTACGCTGAAGTGTTCGGTGATCGAGAGATTGGACCTGGTTTCAATGACATGGTTTTGTGTGGATCAGGAATCCTCTTTTCCAATGGAGAGAACTGGAAAGAGATGCGACGCTTCGCTCTCAGCAACCTGCGGGACTTTGGGATGGGCAAAAGAGGAAGTGAAGAGAAAATCATTGAAGAAATTCATCATCTCAAAGGAGAATTTGATAAGTTTGAAGGGAAACCCTTTGACACAACACAGCCTGTGAACTACGCTGTGTCAAACATCATCTCGTCTATTGTGTACGGCAGCAGATTTGAATACATAGACCCTCGTTTCACAGAAATGGTTGCTAGAGCAAATGAAAATGTTCGAGTTGGTGGATCGTTTTCTATGATGGTAAGCATAATCTGCAAGTTAAGTAGAATTTGTACAGTGGGATCTTATTTTTAA
>TCONS_00049640
GGAACTACAGTTGTTCCTCTGCTGACGTCTGTTCTGAAGGATGAAAGTGAATGGGAGAAACCAAACAGCTTTTACCCAGAACACTTCCTTGATGAGAAGGGCCAGTTCGTCAAGAGAGACGCTTTCATGCCCTTCTCTGCAGgGCGCAGGGTTTGTCTGGGAGAGAGTTTGGCCAGGATGGAGCTCTTCCTGTTCTTCACGTCTCTCCTTCAGAGCTACCGCTTCACAACTCCACCCGGAGTGTCTGAAGATGCGCTGGATCTCAAAGGAATCGTTGGAATCACGTTGAATCCGTCTCCACACAAGCTGTGTGCAATCAGACGCTCCTGA

Function

symbol description
cyp2k20 Predicted to enable heme binding activity; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen; and steroid hydroxylase activity. Predicted to be involved in exogenous drug catabolic process; organic acid metabolic process; and xenobiotic metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle.

GO:

id name namespace
GO:0042738 exogenous drug catabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-5 Predicted to enable heme binding activity; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen; and steroid hydroxylase activity. Predicted to be involved in exogenous drug catabolic process; organic acid metabolic process; and xenobiotic metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle.

Ensembl:

ensembl_id ENSDARG00000101632

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049638 False 1654 mRNA 0.45 9 12718100 12730554
TCONS_00049639 False 735 mRNA 0.43 4 12718171 12720543
TCONS_00049640 True 330 mRNA 0.51 2 12725343 12730486

Neighbor

gene id symbol gene type direction distance location
XLOC_025112 cyp2k18 coding upstream 2668 12710350 ~ 12715432 (+)
XLOC_025111 abca3b coding upstream 18195 12593558 ~ 12699905 (+)
XLOC_025110 ccnf coding upstream 131487 12554801 ~ 12586613 (+)
XLOC_025109 vasnb coding upstream 230524 12440099 ~ 12487576 (+)
XLOC_025108 glis2b coding upstream 382173 12322170 ~ 12335927 (+)
XLOC_025114 cyp2k19 coding downstream 1828 12732382 ~ 12740310 (+)
XLOC_025115 cyp2k21 coding downstream 13529 12744083 ~ 12749198 (+)
XLOC_025116 cyp2k17 coding downstream 24981 12755535 ~ 12763119 (+)
XLOC_025117 cyp2k16 coding downstream 34340 12764894 ~ 12780758 (+)
XLOC_025118 cyp2k8 coding downstream 53906 12784460 ~ 12802380 (+)
XLOC_025429 BX649540.1 misc downstream 17518185 30248739 ~ 30249036 (+)
XLOC_025107 NA non-coding upstream 453642 12239692 ~ 12264458 (+)
XLOC_025106 NA non-coding upstream 636727 12076852 ~ 12081373 (+)
XLOC_025105 NA non-coding upstream 642965 12074888 ~ 12075135 (+)
XLOC_025103 NA non-coding upstream 859297 11855320 ~ 11858803 (+)
XLOC_025102 NA non-coding upstream 1137380 11576675 ~ 11580720 (+)
XLOC_025122 NA non-coding downstream 108140 12838694 ~ 12854479 (+)
XLOC_025125 LO018183.1 non-coding downstream 418996 13149550 ~ 13167328 (+)
XLOC_025128 NA non-coding downstream 630149 13360703 ~ 13367508 (+)
XLOC_025129 NA non-coding downstream 659308 13389862 ~ 13406082 (+)
XLOC_025130 dre-mir-23a-2 non-coding downstream 675672 13406226 ~ 13406323 (+)

Expression


Co-expression Network