G572457 (LOC106593457)


Basic Information

Item Value
gene id G572457
gene name LOC106593457
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 8864628 ~ 8864914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU652667
ATGATGAACAGAATCTCCACCAAGATGTCGCTGTAACTGGGGGGGTTGCGAGCCCCAGAGCCGCCCCCCTCGTCCCGCCCCTCCACCACGGTGAAGCAAACGTTATAGGGCACGGTGATGGCCACATAGAAAGTGGCCAGGAGGATCAGCCAATCCCAGCCCGCCTTGAAGGTCCCATAGTGTAGCAGGATGAAGCGAGACTTTGGGGTGGCAGCCACCTTGTACTCAGGGATGGGGTTGGTGGTCGCCCCAAACATACTCTGGAGAAAATAATGACACATCATAAC

Function

NR:

description
PREDICTED: potassium voltage-gated channel subfamily H member 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU652667 True 287 lncRNA 0.56 1 8864628 8864914

Neighbor

gene id symbol gene type direction distance location
LOC110527270 LOC106574807 coding upstream 237746 8620663 ~ 8626882 (+)
LOC110527268 LOC106575873 coding upstream 254765 8608684 ~ 8609863 (+)
LOC110527267 LOC106575871 coding upstream 266288 8597362 ~ 8598340 (+)
LOC118965341 LOC106575870 coding upstream 271766 8590381 ~ 8592862 (+)
LOC110496917 LOC106595105 coding upstream 277914 8585033 ~ 8586714 (+)
LOC118965237 LOC106574888 coding downstream 23098 8888012 ~ 8890717 (+)
LOC110512356 LOC106575836 coding downstream 45777 8910691 ~ 8912800 (+)
LOC110527273 LOC106574813 coding downstream 289023 9153937 ~ 9159959 (+)
LOC110515808 LOC106575810 coding downstream 320361 9185275 ~ 9664625 (+)
LOC118965238 LOC106575811 coding downstream 799768 9664682 ~ 9669888 (+)
G572379 NA non-coding upstream 106518 8757761 ~ 8758110 (+)
G572377 NA non-coding upstream 107044 8757248 ~ 8757584 (+)
G572376 NA non-coding upstream 107588 8756816 ~ 8757040 (+)
G572373 NA non-coding upstream 108923 8755469 ~ 8755705 (+)
G572372 NA non-coding upstream 109237 8755156 ~ 8755391 (+)
G572465 NA non-coding downstream 12933 8877847 ~ 8878047 (+)
G572470 NA non-coding downstream 37943 8902857 ~ 8903491 (+)
G572472 NA non-coding downstream 39686 8904600 ~ 8905193 (+)
G572473 NA non-coding downstream 43171 8908085 ~ 8908700 (+)
G572315 NA other upstream 213730 8649980 ~ 8650898 (+)
G570834 NA other upstream 723866 8140282 ~ 8140762 (+)
G570875 NA other upstream 778875 8084271 ~ 8085753 (+)
G570868 NA other upstream 785288 8077745 ~ 8079340 (+)
G570827 LOC107379067 other upstream 793070 8063107 ~ 8071558 (+)
G572476 NA other downstream 57421 8922335 ~ 8922794 (+)
G572449 NA other downstream 65195 8930109 ~ 8933878 (+)
LOC110497049 LOC106575743 other downstream 1101753 9879599 ~ 9980430 (+)
G573366 NA other downstream 1263207 10128121 ~ 10132016 (+)
LOC110527289 LOC106590510 other downstream 1314505 10173615 ~ 10233047 (+)

Expression


Co-expression Network