XLOC_002512 (CU856539.1)


Basic Information

Item Value
gene id XLOC_002512
gene name CU856539.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2499383 ~ 2527342 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004688
CAGCAGCTCGCAGTTGTGCTCTCTGACCATGCGGGGCCGCTGTTCTGCAAAACGCCGTCACATAACGCAGTTGTTACAAGAAGAGATACAGCTGCTCAGGGAATCGGCAAGCCCAGTGTGTATCATGCTGTTGTGGTCATCTTTCTAGAGTTTTTCGCCTGGGGTCTCCTGACCACACCAATGCTCACGGTTCTGCATGAGACCTTCCCCACACACACCTTCTTAATAAATGGCCTGATTCAGGGGGTGAagGGTCTGCTGTCTTTTATGAGCGCTCCGTTAATTGGAGCTCTGTCAGACGTGTGGGGCAGACGCTCTTTTCTGCTGGTGACCGTCTTCTTCACTTGCGCTCCAATACCTCTGATGAGACTCAGTCCATGgtGGTATTTCGCCATGATATCAGTGTCTGGTGCGTTTTCTGTCACCTTCTCTGTGATCTTCGCTTACATCGCAGATGTGACAGACGAGCGGGAGAGGAGTACAGCCTACGGACTCGTTTCTGCGACGTTCGCAGCGAGTCTGGTCACCAGCCCGGCCATCGGCGCATATCTGTCAGCCAGTTATGGTGATAATCTGGTGGTGCTGGTGGCCACTCTCATCGCCCTGGCCGACATCTGCTTCATCCTGCTGGCTGTCCCAGAGTCGCTGCCAGACAAGATGAGGCTCAACACCTGGGGGGCTCCTATCTCTTGGGAACAAGCTGATCCCTTTGCAtcttTGCGTAAAGTTGGCCAGGACACAACAGTTCTGCTCATCTGCATCACCGTATTTCTGTCCTATCTGCCCGAGGCGGGTCAATACTCCAGCTTTTTCCTCTACTTGCGTCAGGTCATTAACTTCTCGCCCAAAACGATCGCGGTGTTCATCGGCGTGGTGGGAATCCTCTCCATCCTGGCGCAGACACTTTTTCTCACTCTGCTAATGAGGACCATCGGGAACAAAAACACAGTTCTTTTGGGTCTGGGTTTCCAGATTCTTCAACTGGCCTGGTACGGTTTGGGGTCCGAGCCGTGgaTGATGTGGGCGGCCGGTGCGGTGGCGGCCATGTCCAGCATAACATTCCCTGCAGTGAGTGCTTTAGTGTCACGCAGCGCAGATCCAGATAAACAAGGTCTGGTTCAGGGCATGATAACAGGTATCCGGGGGCTCTGTAATGGTCTCGGTCCTGCTTTGTACGGTTTCGTTTTCTTCCTCTTCAATGTGGAGCTGAACGCCCACAGAGGTACACGCACAAATGTCCCCTTATTAGGGCCTACTACAATCCCCGGCCCTCCGTTTCTCCTGGGCGCCTGTACGGTAGTGGTGGCGTTTATAGTGGCTCTCTTTATACCCGACCACTCGACGCCCCCATCGACACCCTGCCAAACCCGTAAAAACAGTCTGGCCGGAGCTCACACCAACACACCGCTGCCAGGGAGCGACGAAGATTTCGAGCCGCTGCTGGAGGACAGCACTGTTAATGAAACTGGGAATGTATAA
>TCONS_00004689
CCCTCGGCCGACAGGACGGTTGATTTTCTCGCCGGTAAAGCTGGAAGGAGGCGGCGGAGCGTCCAGCAGGGAATCGGCAAGCCCAGTGTGTATCATGCTGTTGTGGTCATCTTTCTAGAGTTTTTCGCCTGGGGTCTCCTGACCACACCAATGCTCACGGTTCTGCATGAGACCTTCCCCACACACACCTTCTTAATAAATGGCCTGATTCAGGGGGTGAagGGTCTGCTGTCTTTTATGAGCGCTCCGTTAATTGGAGCTCTGTCAGACGTGTGGGGCAGACGCTCTTTTCTGCTGGTGACCGTCTTCTTCACTTGCGCTCCAATACCTCTGATGAGACTCAGTCCATGgtGGTATTTCGCCATGATATCAGTGTCTGGTGCGTTTTCTGTCACCTTCTCTGTGATCTTCGCTTACATCGCAGATGTGACAGACGAGCGGGAGAGGAGTACAGCCTACGGACTCGTTTCTGCGACGTTCGCAGCGAGTCTGGTCACCAGCCCGGCCATCGGCGCATATCTGTCAGCCAGTTATGGTGATAATCTGGTGGTGCTGGTGGCCACTCTCATCGCCCTGGCCGACATCTGCTTCATCCTGCTGGCTGTCCCAGAGTCGCTGCCAGACAAGATGAGGCTCAACACCTGGGGGGCTCCTATCTCTTGGGAACAAGCTGATCCCTTTGCAtcttTGCGTAAAGTTGGCCAGGACACAACAGTTCTGCTCATCTGCATCACCGTATTTCTGTCCTATCTGCCCGAGGCGGGTCAATACTCCAGCTTTTTCCTCTACTTGCAAACAAGCAGTGGATTTCTTTCTACACTTTTTCTCACTCTGCTAATGAGGACCATCGGGAACAAAAACACAGTTCTTTTGGGTCTGGGTTTCCAGATTCTTCAACTGGCCTGGTACGGTTTGGGGTCCGAGCCGTGgaTGATGTGGGCGGCCGGTGCGGTGGCGGCCATGTCCAGCATAACATTCCCTGCAGTGAGTGCTTTAGTGTCACGCAGCGCAGATCCAGATAAACAAGGTCTGGTTCAGGGCATGATAACAGGTATCCGGGGGCTCTGTAATGGTCTCGGTCCTGCTTTGTACGGTTTCGTTTTCTTCCTCTTCAATGTGGAGCTGAGTGGGATCACCCCCATCCAGCCCGACTTCACTACAATCCCCGGCCCTCCGTTTCTCCTGGGCGCCTGTACGGTAGTGGTGGCGTTTATAGTGGCTCTCTTTATACCCGACCACTCGACGCCCCCATCGACACCCTGCCAAACCCGTAAAAACAGTCTGGCCGGAGCTCACACCAACACACCGCTGCCAGGGAGCGACGAAGATTTCGAGCCGCTGCTGGAGGACAGCACTGTTAGACCACcgaacatttgtattttattatatttgtttctcCAAGTGCATTTTGAATCTTGA
>TCONS_00004690
aaatgtgctgaaaaatcttctctccctaAAACACAAATTCAGGGAATCGGCAAGCCCAGTGTGTATCATGCTGTTGTGGTCATCTTTCTAGAGTTTTTCGCCTGGGGTCTCCTGACCACACCAATGCTCACGGTTCTGCATGAGACCTTCCCCACACACACCTTCTTAATAAATGGCCTGATTCAGGGGGTGAagGGTCTGCTGTCTTTTATGAGCGCTCCGTTAATTGGAGCTCTGTCAGACGTGTGGGGCAGACGCTCTTTTCTGCTGGTGACCGTCTTCTTCACTTGCGCTCCAATACCTCTGATGAGACTCAGTCCATGgtGGTATTTCGCCATGATATCAGTGTCTGGTGCGTTTTCTGTCACCTTCTCTGTGATCTTCGCTTACATCGCAGATGTGACAGACGAGCGGGAGAGGAGTACAGCCTACGGACTCGTTTCTGCGACGTTCGCAGCGAGTCTGGTCACCAGCCCGGCCATCGGCGCATATCTGTCAGCCAGTTATGGTGATAATCTGGTGGTGCTGGTGGCCACTCTCATCGCCCTGGCCGACATCTGCTTCATCCTGCTGGCTGTCCCAGAGTCGCTGCCAGACAAGATGAGGCTCAACACCTGGGGGGCTCCTATCTCTTGGGAACAAGCTGATCCCTTTGCAtcttTGCGTAAAGTTGGCCAGGACACAACAGTTCTGCTCATCTGCATCACCGTATTTCTGTCCTATCTGCCCGAGGCGGGTCAATACTCCAGCTTTTTCCTCTACTTGCAAACAAGCAGTGGATTTCTTTCTACACTTTTTCTCACTCTGCTAATGAGGACCATCGGGAACAAAAACACAGTTCTTTTGGGTCTGGGTTTCCAGATTCTTCAACTGGCCTGGTACGGTTTGGGGTCCGAGCCGTGgaTGATGTGGGCGGCCGGTGCGGTGGCGGCCATGTCCAGCATAACATTCCCTGCAGTGAGTGCTTTAGTGTCACGCAGCGCAGATCCAGATAAACAAGGTCTGGTTCAGGGCATGATAACAGGTATCCGGGGGCTCTGTAATGGTCTCGGTCCTGCTTTGTACGGTTTCGTTTTCTTCCTCTTCAATGTGGAGCTGAGTGGGATCACCCCCATCCAGCCCGACTTCACTACAATCCCCGGCCCTCCGTTTCTCCTGGGCGCCTGTACGGTAGTGGTGGCGTTTATAGTGGCTCTCTTTATACCCGACCACTCGACGCCCCCATCGACACCCTGCCAAACCCGTAAAAACAGTCTGGCCGGAGCTCACACCAACACACCGCTGCCAGGGAGCGACGAAGATTTCGAGCCGCTGCTGGAGGACAGCACTGTgttggaggagagtccttaccaatggtggaggagttcaagacgggcgaccccggattaa
>TCONS_00004691
AAGGTTGCTAGAGTTGGTTTTTGtttatggCAGGGAATCGGCAAGCCCAGTGTGTATCATGCTGTTGTGGTCATCTTTCTAGAGTTTTTCGCCTGGGGTCTCCTGACCACACCAATGCTCACGGTTCTGCATGAGACCTTCCCCACACACACCTTCTTAATAAATGGCCTGATTCAGGGGGTGAagGGTCTGCTGTCTTTTATGAGCGCTCCGTTAATTGGAGCTCTGTCAGACGTGTGGGGCAGACGCTCTTTTCTGCTGGTGACCGTCTTCTTCACTTGCGCTCCAATACCTCTGATGAGACTCAGTCCATGgtGGTATTTCGCCATGATATCAGTGTCTGGTGCGTTTTCTGTCACCTTCTCTGTGATCTTCGCTTACATCGCAGATGTGACAGACGAGCGGGAGAGGAGTACAGCCTACGGACTCGTTTCTGCGACGTTCGCAGCGAGTCTGGTCACCAGCCCGGCCATCGGCGCATATCTGTCAGCCAGTTATGGTGATAATCTGGTGGTGCTGGTGGCCACTCTCATCGCCCTGGCCGACATCTGCTTCATCCTGCTGGCTGTCCCAGAGTCGCTGCCAGACAAGATGAGGCTCAACACCTGGGGGGCTCCTATCTCTTGGGAACAAGCTGATCCCTTTGCAtcttTGCGTAAAGTTGGCCAGGACACAACAGTTCTGCTCATCTGCATCACCGTATTTCTGTCCTATCTGCCCGAGGCGGGTCAATACTCCAGCTTTTTCCTCTACTTGCGTCAGGTCATTAACTTCTCGCCCAAAACGATCGCGGTGTTCATCGGCGTGGTGGGAATCCTCTCCATCCTGGCGCAGACACTTTTTCTCACTCTGCTAATGAGGACCATCGGGAACAAAAACACAGTTCTTTTGGGTCTGGGTTTCCAGATTCTTCAACTGGCCTGGTACGGTTTGGGGTCCGAGCCGTGgaTGATGTGGGCGGCCGGTGCGGTGGCGGCCATGTCCAGCATAACATTCCCTGCAGTGAGTGCTTTAGTGTCACGCAGCGCAGATCCAGATAAACAAGGTCTGGTTCAGGGCATGATAACAGGTATCCGGGGGCTCTGTAATGGTCTCGGTCCTGCTTTGTACGGTTTCGTTTTCTTCCTCTTCAATGTGGAGCTGAGTGGGATCACCCCCATCCAGCCCGACTTCGCCATCCCGATACAGACGCCCACAGAGAAGACTACAATCCCCGGCCCTCCGTTTCTCCTGGGCGCCTGTACGGTAGTGGTGGCGTTTATAGTGGCTCTCTTTATACCCGACCACTCGACGCCCCCATCGACACCCTGCCAAACCCGTAAAAACAGTCTGGCCGGAGCTCACACCAACACACCGCTGCCAGGGAGCGACGAAGATTTCGAGCCGCTGCTGGAGGACAGCACTGTGTGA
>TCONS_00004692
cccggaggaaacccaccgccaacacggggagaacatgcaaacactgagaacagaaacGTCCAGCAGGGAATCGGCAAGCCCAGTGTGTATCATGCTGTTGTGGTCATCTTTCTAGAGTTTTTCGCCTGGGGTCTCCTGACCACACCAATGCTCACGGTTCTGCATGAGACCTTCCCCACACACACCTTCTTAATAAATGGCCTGATTCAGGGGGTGAagGGTCTGCTGTCTTTTATGAGCGCTCCGTTAATTGGAGCTCTGTCAGACGTGTGGGGCAGACGCTCTTTTCTGCTGGTGACCGTCTTCTTCACTTGCGCTCCAATACCTCTGATGAGACTCAGTCCATGgtGGTATTTCGCCATGATATCAGTGTCTGGTGCGTTTTCTGTCACCTTCTCTGTGATCTTCGCTTACATCGCAGATGTGACAGACGAGCGGGAGAGGAGTACAGCCTACGGACTCGTTTCTGCGACGTTCGCAGCGAGTCTGGTCACCAGCCCGGCCATCGGCGCATATCTGTCAGCCAGTTATGGTGATAATCTGGTGGTGCTGGTGGCCACTCTCATCGCCCTGGCCGACATCTGCTTCATCCTGCTGGCTGTCCCAGAGTCGCTGCCAGACAAGATGAGGCTCAACACCTGGGGGGCTCCTATCTCTTGGGAACAAGCTGATCCCTTTGCAtcttTGCGTAAAGTTGGCCAGGACACAACAGTTCTGCTCATCTGCATCACCGTATTTCTGTCCTATCTGCCCGAGGCGGGTCAATACTCCAGCTTTTTCCTCTACTTGCAAACAAGCAGTGGATTTCTTTCTACACTTTTTCTCACTCTGCTAATGAGGACCATCGGGAACAAAAACACAGTTCTTTTGGGTCTGGGTTTCCAGATTCTTCAACTGGCCTGGTACGGTTTGGGGTCCGAGCCGTGgaTGATGTGGGCGGCCGGTGCGGTGGCGGCCATGTCCAGCATAACATTCCCTGCAGTGAGTGCTTTAGTGTCACGCAGCGCAGATCCAGATAAACAAGGTCTGGTTCAGGGCATGATAACAGGTATCCGGGGGCTCTGTAATGGTCTCGGTCCTGCTTTGTACGGTTTCGTTTTCTTCCTCTTCAATGTGGAGCTGAGTGGGATCACCCCCATCCAAGGTACACGCACAAATGTCCCCTTATTAGGGCCTACTACAATCCCCGGCCCTCCGTTTCTCCTGGGCGCCTGTACGGTAGTGGTGGCGTTTATAGTGGCTCTCTTTATACCCGACCACTCGACGCCCCCATCGACACCCTGCCAAACCCGTAAAAACAGTCTGGCCGGAGCTCACACCAACACACCGCTGCCAGGGAGCGACGAAGATTTCGAGCCGCTGCTGGAGGACAGCACTGTGTGA
>TCONS_00004693
ATGAGATGTAATGATGAAATGgcgatgaagatgatgatggccCAGGGCGAGAAAGACCCGAAACACACCAGCCGAGTAGTGCTGGTCAAGAGGATCATAATGAAGCATGACAATCCGGTCCAGCAGGGAATCGGCAAGCCCAGTGTGTATCATGCTGTTGTGGTCATCTTTCTAGAGTTTTTCGCCTGGGGTCTCCTGACCACACCAATGCTCACGGTTCTGCATGAGACCTTCCCCACACACACCTTCTTAATAAATGGCCTGATTCAGGGGGTGAagGGTCTGCTGTCTTTTATGAGCGCTCCGTTAATTGGAGCTCTGTCAGACGTGTGGGGCAGACGCTCTTTTCTGCTGGTGACCGTCTTCTTCACTTGCGCTCCAATACCTCTGATGAGACTCAGTCCATGgtGGTATTTCGCCATGATATCAGTGTCTGGTGCGTTTTCTGTCACCTTCTCTGTGATCTTCGCTTACATCGCAGATGTGACAGACGAGCGGGAGAGGAGTACAGCCTACGGACTCGTTTCTGCGACGTTCGCAGCGAGTCTGGTCACCAGCCCGGCCATCGGCGCATATCTGTCAGCCAGTTATGGTGATAATCTGGTGGTGCTGGTGGCCACTCTCATCGCCCTGGCCGACATCTGCTTCATCCTGCTGGCTGTCCCAGAGTCGCTGCCAGACAAGATGAGGCTCAACACCTGGGGGGCTCCTATCTCTTGGGAACAAGCTGATCCCTTTGCAtcttTGCGTAAAGTTGGCCAGGACACAACAGTTCTGCTCATCTGCATCACCGTATTTCTGTCCTATCTGCCCGAGGCGGGTCAATACTCCAGCTTTTTCCTCTACTTGCGTCAGGTCATTAACTTCTCGCCCAAAACGATCGCGGTGTTCATCGGCGTGGTGGGAATCCTCTCCATCCTGGCGCAGACACTTTTTCTCACTCTGCTAATGAGGACCATCGGGAACAAAAACACAGTTCTTTTGGGTCTGGGTTTCCAGATTCTTCAACTGGCCTGGTACGGTTTGGGGTCCGAGCCGTGgaTGATGTGGGCGGCCGGTGCGGTGGCGGCCATGTCCAGCATAACATTCCCTGCAGTGAGTGCTTTAGTGTCACGCAGCGCAGATCCAGATAAACAAGGTCTGGTTCAGGGCATGATAACAGGTATCCGGGGGCTCTGTAATGGTCTCGGTCCTGCTTTGTACGGTTTCGTTTTCTTCCTCTTCAATGTGGAGCTGAGTGGGATCACCCCCATCCAGCCCGACTTCACTACAATCCCCGGCCCTCCGTTTCTCCTGGGCGCCTGTACGGTAGTGGTGGCGTTTATAGTGGCTCTCTTTATACCCGACCACTCGACGCCCCCATCGACACCCTGCCAAACCCGTAAAAACAGTCTGGCCGGAGCTCACACCAACACACCGCTGCCAGGGAGCGACGAAGATTTCGAGCCGCTGCTGGAGGACAGCACTGTGTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000010023

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004688 False 1479 mRNA 0.54 14 2499383 2527342
TCONS_00004689 False 1419 mRNA 0.53 13 2502737 2526626
TCONS_00004690 False 1389 mRNA 0.53 13 2503008 2524917
TCONS_00004691 False 1410 mRNA 0.54 12 2504045 2522588
TCONS_00004692 False 1383 mRNA 0.54 13 2504045 2524297
TCONS_00004693 True 1473 mRNA 0.54 12 2504045 2526526

Neighbor

gene id symbol gene type direction distance location
XLOC_002511 tdgf1 coding downstream 537453 1955475 ~ 1961930 (-)
XLOC_002510 NA coding downstream 545924 1948097 ~ 1953459 (-)
XLOC_002509 epb41l4a coding downstream 672158 1745475 ~ 1827225 (-)
XLOC_002506 NA coding downstream 758208 1678283 ~ 1741175 (-)
XLOC_002513 CU856539.3 coding upstream 45819 2573161 ~ 2603801 (-)
XLOC_002514 pdxp coding upstream 152737 2680079 ~ 2682198 (-)
XLOC_002515 mier3a coding upstream 168122 2695464 ~ 2713240 (-)
XLOC_002516 ash2l coding upstream 231884 2759226 ~ 2788792 (-)
XLOC_002517 ddx56 coding upstream 329035 2856377 ~ 2875735 (-)
XLOC_002505 NA non-coding downstream 780746 1669144 ~ 1718637 (-)
XLOC_002504 NA non-coding downstream 831753 1666342 ~ 1667630 (-)
XLOC_002502 CABZ01066320.1 non-coding downstream 946594 1544163 ~ 1552789 (-)
XLOC_002518 NA non-coding upstream 370637 2897979 ~ 2899304 (-)
XLOC_002525 NA non-coding upstream 794795 3322137 ~ 3332362 (-)
XLOC_002529 CU571170.1 non-coding upstream 979198 3506540 ~ 3506654 (-)
XLOC_002530 FP236598.1 non-coding upstream 1241309 3768651 ~ 3768766 (-)
XLOC_002531 NA non-coding upstream 1426748 3954090 ~ 3956849 (-)

Expression


Co-expression Network