XLOC_025121 (si:ch211-8c17.3)


Basic Information

Item Value
gene id XLOC_025121
gene name si:ch211-8c17.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12835370 ~ 12837643 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049652
GTGTCTGTCATTATTCAGTCAGTATGAAACTCAGTCAACTTCCTCTTGTGCTCTTGCTGATTTCAAACATCCACTCTGAACATGTTGAAGACTATCCTAAAGCCAGTGTGAGGATTACTCCTGATCTGCATGTGTTCAGAGGAGAGTCAGTCACTCTCAGATGTGACATTAATGCTGAAGGAGTCTCTAGCTGGCTGTACAGCTGGTATAAAGAAGGTTCAGAAGGTGCATTCAGTGGTTTACAGGAATATATATTCAATGTTACTGAGTCTTATGCAGGTAAATACTCCTGTTCTGGCACTGAGAGTAAAGGTTCACGCAGATCACAAATGAGTGATGCAGTTGCACTGACAGTATCAGACAGAGCCCAGACAGCTTTAAGTGTTTCTCCACAGAACTGGTTGACTGaaggagattcagtgactctgacTTGTGAGGTTAACGGCTCCTCTACAGGCTGGACATTCAACTGGTACATGCTAATGCTTTCTGACAATAGTTATCATCATAAACTTCTCTCAGACAGCAgtagaggagctggaggaaaatACACTGTCAGTTCTGTTGCTCTAAAACAAACAGGAGTTTATTTGTGTGAAATAGAGAGAGGAAAACCAGCCTATACAACTTTCAGCAACACACTGCCACTGTGGGTCACTGGTGAGTTT

Function

symbol description
si:ch211-8c17.3 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in cell surface receptor signaling pathway. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-353 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in cell surface receptor signaling pathway. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000102230

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049652 True 668 mRNA 0.43 5 12835370 12837643

Neighbor

gene id symbol gene type direction distance location
XLOC_025120 si:ch211-8c17.2 coding upstream 2851 12828824 ~ 12832519 (+)
XLOC_025119 cyp2k6 coding upstream 8983 12816362 ~ 12826387 (+)
XLOC_025118 cyp2k8 coding upstream 32990 12784460 ~ 12802380 (+)
XLOC_025117 cyp2k16 coding upstream 54612 12764894 ~ 12780758 (+)
XLOC_025116 cyp2k17 coding upstream 72251 12755535 ~ 12763119 (+)
XLOC_025122 NA coding downstream 1051 12838694 ~ 12854479 (+)
XLOC_025123 si:ch211-8c17.4 coding downstream 10480 12848123 ~ 12850397 (+)
XLOC_025124 kcnj2b coding downstream 23515 12861158 ~ 12862480 (+)
XLOC_025125 LO018183.1 coding downstream 311907 13149550 ~ 13167328 (+)
XLOC_025126 sun1 coding downstream 352369 13190012 ~ 13258898 (+)
XLOC_025429 BX649540.1 misc downstream 17411096 30248739 ~ 30249036 (+)
XLOC_025107 NA non-coding upstream 570912 12239692 ~ 12264458 (+)
XLOC_025106 NA non-coding upstream 753997 12076852 ~ 12081373 (+)
XLOC_025105 NA non-coding upstream 760235 12074888 ~ 12075135 (+)
XLOC_025103 NA non-coding upstream 976567 11855320 ~ 11858803 (+)
XLOC_025102 NA non-coding upstream 1254650 11576675 ~ 11580720 (+)
XLOC_025128 NA non-coding downstream 523060 13360703 ~ 13367508 (+)
XLOC_025129 NA non-coding downstream 552219 13389862 ~ 13406082 (+)
XLOC_025130 dre-mir-23a-2 non-coding downstream 568583 13406226 ~ 13406323 (+)

Expression


Co-expression Network