G572964 (LOC106574783)


Basic Information

Item Value
gene id G572964
gene name LOC106574783
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 10011188 ~ 10012739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU653252
CAGTCAGTGAGGAGTGTTCTCAGGGTCAGTAACACGTTCCCTCTGTGTCTCTTGGTGAATCACTGGATATACTGTACAGATGGGCACAACACTGAATGAATCTGTGATTACAATATGTGTGGACATGTTTCATTGAAGCTTTTGCTCCAGCAAGTCCTCGCTTGGTTTGAATTTTCTGGGTGTGTTGTAATAGAGTGCCTGATAGATCAAAGGTCATAGGGAGGTCATGGATGCAAATTGCCATGACAACCAATAAGTACATCACTGCTGGGCCAATAGGGCGCTCCGATTAGCCTTCATCTTCTCCAGGCGCTTGGCCAGGTGGCTGTTACTGGCCTCCAGCTCATCAATCCTGTCCAGGGCAGACCTCAGCTCTCTCTGTAGCTTGCGTTTCTCCACTTTGAGCTCGTCCTCTACTTTCTCTGCGCTCTCAGAGGCCGACTTGTAACGAGTCACCTGACCCTCCAACCGGATGATATTCTGTTCCAGGGCTGTGACTTCCTGTTCTGATTTCACCAGTTTAAACTTGAGGTCACTGATTTGCCGGTTGGCATCCCTCTGTAAGTCGAGGATGTGGGGGTCCATGCCGTTCTCAAGTCTGTCCTCCTCAGGACTCAAACCCTCTGTCCCGTTCCTCTGTTTCCCCTCCAGCTGAGACTTCAGCCTCTTCACCTGATCAGCTAAACTCTCCCTCTCATCAACTATTTTCCTCAGTCTGACTTCTGCAATACAAACAGACAGCTGACTTTGAATCAACAGCATGAAATTCTAATAGTTGGTTAGTAAAAGTTTGAGTAGTCGAGATCAGTAATAGAGTAGTTTTGTACGTCAACATTTACCACACAGTTCAATTAACAGCCTTGTTTTTCTAGTTTCTAATCTGTATAATTTTTTTATACATACAACACA

Function

NR:

description
leucine-rich repeat flightless-interacting protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU653252 True 909 lncRNA 0.46 5 10011188 10012739

Neighbor

gene id symbol gene type direction distance location
LOC110497049 LOC106575743 coding upstream 30758 9879599 ~ 9980430 (+)
LOC118965239 LOC106575823 coding upstream 134643 9783076 ~ 9876545 (+)
LOC110528748 acadl coding upstream 229559 9776039 ~ 9781629 (+)
LOC100135948 LOC100194643 coding upstream 241507 9763202 ~ 9769681 (+)
LOC110527090 LOC106575822 coding upstream 252204 9745341 ~ 9758984 (+)
LOC110527289 LOC106590510 coding downstream 160876 10173615 ~ 10233047 (+)
LOC118965244 NA coding downstream 361179 10373918 ~ 10378145 (+)
LOC110527198 LOC106574751 coding downstream 368286 10381025 ~ 10410589 (+)
LOC110528725 LOC106574750 coding downstream 408445 10421184 ~ 10423568 (+)
LOC110527195 LOC106574795 coding downstream 415234 10427973 ~ 10462576 (+)
G572963 NA non-coding upstream 338 10009851 ~ 10010850 (+)
G572875 NA non-coding upstream 5635 10001300 ~ 10005553 (+)
G572961 NA non-coding upstream 10417 10000529 ~ 10000771 (+)
G572960 NA non-coding upstream 11191 9999726 ~ 9999997 (+)
G572956 LOC106595300 non-coding upstream 15028 9994823 ~ 9996160 (+)
G572969 NA non-coding downstream 7601 10020340 ~ 10022177 (+)
G572986 LOC106574782 non-coding downstream 52830 10065569 ~ 10066182 (+)
G573363 NA non-coding downstream 113109 10125848 ~ 10126084 (+)
G573364 NA non-coding downstream 114295 10127034 ~ 10145510 (+)
G573369 NA non-coding downstream 121303 10134042 ~ 10154398 (+)
G572449 NA other upstream 1077310 8930109 ~ 8933878 (+)
G572476 NA other upstream 1088394 8922335 ~ 8922794 (+)
G572315 NA other upstream 1360290 8649980 ~ 8650898 (+)
G570834 NA other upstream 1870426 8140282 ~ 8140762 (+)
G573366 NA other downstream 115382 10128121 ~ 10132016 (+)
G574038 NA other downstream 863368 10876107 ~ 10877184 (+)
G574122 NA other downstream 990765 11003504 ~ 11076001 (+)
G574194 NA other downstream 1088806 11101545 ~ 11102286 (+)

Expression


Co-expression Network