G573380


Basic Information

Item Value
gene id G573380
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 10166052 ~ 10201258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU653745
ttttacacAAGAGCGTAAAAACATCCACTGACTGGCAAGAAACTGCGTTTGCAAATTCAAAAAGAGTTGCAAATGATGTGCAGGTTGTGACTGAAATGTACACACATTGGCTGTTTTTCTTTTGTGTGGTGAAATAAATGCAAACGAGTTGAACAAAAAGAACAAGATAACTGAAATAGAACTAATGGTACATTATTTTAAACAGTAGCAGAACTGACATTTTTAAACATTACACAGAAAGCACACCTTCATTGATTCCGTTTCACAAAACTTCACAAAATCACTGCACCTACAGATcaacaaatatataaatatgatATTTACAGAATAAACAATGATCTAATAATGTGGATTTGAAAGTCTACTCCTTCATTCTACATACTAAGCACCAATACTTTCTAAATGCGTCATCTAGAGGAGTGTTTGGGACTGGATGGATTCTCCTGGCTTCACATTGACACCTCACTAACCATCATACATACATCTACTTCTCACATTGACACCTCACTAACCATCATACACACATCAACATACATACATCTACTTCTCACATTCTACAGATTGGCTTTCGTGTTTGTAATGTCTTTTTTATGGCCCCGGTGAAGACCAGAAGTTGCTTAAGAGTCAGCTGATGGGGATCAGAATAaagaatacaaaataaaatagagCTTTAGAGTTTTGACTCTGGTCTCGGCTGTCAGTCCGTTTGACATTCCTGATTTCCATGTAAACACAGTGGCTTGATTCAGTGGCAGGTCCTTCAGGGTAATGgagtctggttgactgactgCCTGCTCACATAAACACTGGCAGGGAGAGCACCTCGTCTCCCTCCGCTGTGGCTCTGACCAGGGcagggggaagtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtcgtgagcTTGACGTGAGCTTGTCCAATAGTCAGCTTGGTCAAGTGAACTGATTAAATTGCCGTTGGCTTATCCTCAGACCTAGTGAGACTTTTTCTCTACCCAGCCTAAGTCTCTTAAATTCTCCTAATGGCAATATAGTGGACTTTAAATGCTGACCTTTCTACCACTTGCACCACTGCTTTCTCTTCAC
>TU653747
ttttacacAAGAGCGTAAAAACATCCACTGACTGGCAAGAAACTGCGTTTGCAAATTCAAAAAGAGTTGCAAATGATGTGCAGGTTGTGACTGAAATGTACACACATTGGCTGTTTTTCTTTTGTGTGGTGAAATAAATGCAAACGAGTTGAACAAAAAGAACAAGATAACTGAAATAGAACTAATGGTACATTATTTTAAACAGTAGCAGAACTGACATTTTTAAACATTACACAGAAAGCACACCTTCATTGATTCCGTTTCACAAAACTTCACAAAATCACTGCACCTACAGATcaacaaatatataaatatgatATTTACAGAATAAACAATGATCTAATAATGTGGATTTGAAAGTCTACTCCTTCATTCTACATACTAAGCACCAATACTTTCTAAATGCGTCATCTAGAGGAGTGTTTGGGACTGGATGGATTCTCCTGGCTTCACATTGACACCTCACTAACCATCATACATACATCAACATACATACATCTACTTCTCACATTGACACCTCACTAACCATCATACACACATCAACATGAATACTTCTCACATTGACACCTCACTAACCATCATACACACATCAACATACATACATCTACTTCTCACATTCTACAGATTGGCTTTCGTGTTTGTAATGTCTTTTTTATGGCCCCGGTGAAGACCAGAAGTTGCTTAAGAGTCAGCTGATGGGGATCAGAATAaagaatacaaaataaaatagagCTTTAGAGTTTTGACTCTGGTCTCGGCTGTCAGTCCGTTTGACATTCCTGATTTCCATGTAAACACAGTGGCTTGATTCAGTGGCAGGTCCTTCAGGGTAATGgagtctggttgactgactgCCTGCTCACATAAACACTGGCAGGGAGAGCACCTCGTCTCCCTCCGCTGTGGCTCTGACCAGGGcagggggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>TU653748
ttttacacAAGAGCGTAAAAACATCCACTGACTGGCAAGAAACTGCGTTTGCAAATTCAAAAAGAGTTGCAAATGATGTGCAGGTTGTGACTGAAATGTACACACATTGGCTGTTTTTCTTTTGTGTGGTGAAATAAATGCAAACGAGTTGAACAAAAAGAACAAGATAACTGAAATAGAACTAATGGTACATTATTTTAAACAGTAGCAGAACTGACATTTTTAAACATTACACAGAAAGCACACCTTCATTGATTCCGTTTCACAAAACTTCACAAAATCACTGCACCTACAGATcaacaaatatataaatatgatATTTACAGAATAAACAATGATCTAATAATGTGGATTTGAAAGTCTACTCCTTCATTCTACATACTAAGCACCAATACTTTCTAAATGCGTCATCTAGAGGAGTGTTTGGGACTGGATGGATTCTCCTGGCTTCACATTGACACCTCACTAACCATCATACATACATCAACATACATACATCTACTTCTCACATTGACACCTCACTAACCATCATACACACATCAACATGAATACTTCTCACATTGACACCTCACTAACCATCATACACACATCAACATGGATACATCTACTTCTCACATTGACACCTCACTAACCATCATACACACATCAACATACATACATCTACTTCTCACATTCTACAGATTGGCTTTCGTGTTTGTAATGTCTTTTTTATGGCCCCGGTGAAGACCAGAAGTTGCTTAAGAGTCAGCTGATGGGGATCAGAATAaagaatacaaaataaaatagagCTTTAGAGTTTTGACTCTGGTCTCGGCTGTCAGTCCGTTTGACATTCCTGATTTCCATGTAAACACAGTGGCTTGATTCAGTGGCAGGTCCTTCAGGGTAATGgagtctggttgactgactgCCTGCTCACATAAACACTGGCAGGGAGAGCACCTCGTCTCCCTCCGCTGTGGCTCTGACCAGGGcagggggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU653745 False 1110 lncRNA 0.41 3 10166052 10201258
TU653747 False 974 lncRNA 0.40 2 10166052 10167143
TU653748 True 1030 lncRNA 0.40 2 10166052 10167143

Neighbor

gene id symbol gene type direction distance location
LOC110497049 LOC106575743 coding upstream 185622 9879599 ~ 9980430 (+)
LOC118965239 LOC106575823 coding upstream 289507 9783076 ~ 9876545 (+)
LOC110528748 acadl coding upstream 384423 9776039 ~ 9781629 (+)
LOC100135948 LOC100194643 coding upstream 396371 9763202 ~ 9769681 (+)
LOC110527090 LOC106575822 coding upstream 407068 9745341 ~ 9758984 (+)
LOC118965244 NA coding downstream 172660 10373918 ~ 10378145 (+)
LOC110527198 LOC106574751 coding downstream 179767 10381025 ~ 10410589 (+)
LOC110528725 LOC106574750 coding downstream 219926 10421184 ~ 10423568 (+)
LOC110527195 LOC106574795 coding downstream 226715 10427973 ~ 10462576 (+)
LOC110527193 LOC106574775 coding downstream 295299 10496557 ~ 10531876 (+)
G573369 NA non-coding upstream 11654 10134042 ~ 10154398 (+)
G573364 NA non-coding upstream 20542 10127034 ~ 10145510 (+)
G573363 NA non-coding upstream 39968 10125848 ~ 10126084 (+)
G572986 LOC106574782 non-coding upstream 99870 10065569 ~ 10066182 (+)
G572969 NA non-coding upstream 143875 10020340 ~ 10022177 (+)
G573424 NA non-coding downstream 56542 10257800 ~ 10258101 (+)
G573425 NA non-coding downstream 57323 10258581 ~ 10258828 (+)
G573426 NA non-coding downstream 58024 10259282 ~ 10259580 (+)
G573463 NA non-coding downstream 127288 10328546 ~ 10328927 (+)
G573464 NA non-coding downstream 131366 10332624 ~ 10332846 (+)
G573366 NA other upstream 34036 10128121 ~ 10132016 (+)
G572449 NA other upstream 1232174 8930109 ~ 8933878 (+)
G572476 NA other upstream 1243258 8922335 ~ 8922794 (+)
G572315 NA other upstream 1515154 8649980 ~ 8650898 (+)
G574038 NA other downstream 674849 10876107 ~ 10877184 (+)
G574122 NA other downstream 802246 11003504 ~ 11076001 (+)
G574194 NA other downstream 900287 11101545 ~ 11102286 (+)
G574244 NA other downstream 977538 11178796 ~ 11197247 (+)
G574284 NA other downstream 1048841 11250099 ~ 11250780 (+)

Expression


Co-expression Network