Fish Transcriptome and Expression Database

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model fish

XLOC_002513 (CU856539.3)

Basic Information

Item	Value
gene id	XLOC_002513
gene name	CU856539.3
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007121.7
NCBI id	CM002894.2
chromosome length	45420867
location	2573161 ~ 2603801 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004694
gaattaaaaaacAGGCACAACAAAACGCCAGTAAAAACTTTAATTATCGCAAAACCAGACGGAGATTTCATTGCAACACACGGCAGGaagcatattaaagtaaACCAGCTCAAGTGCTTCCGtcaatggttaccggtttccgatattttgatgaattttaagggTTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113479

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00004694	True	168	mRNA	0.38	8	2573161	2603801

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_002512	CU856539.1	coding	downstream	45819	2499383 ~ 2527342 (-)
XLOC_002511	tdgf1	coding	downstream	611231	1955475 ~ 1961930 (-)
XLOC_002510	NA	coding	downstream	619702	1948097 ~ 1953459 (-)
XLOC_002509	epb41l4a	coding	downstream	745936	1745475 ~ 1827225 (-)
XLOC_002508	gal3st1b	coding	downstream	839224	1722125 ~ 1733937 (-)
XLOC_002514	pdxp	coding	upstream	76278	2680079 ~ 2682198 (-)
XLOC_002515	mier3a	coding	upstream	91663	2695464 ~ 2713240 (-)
XLOC_002516	ash2l	coding	upstream	155425	2759226 ~ 2788792 (-)
XLOC_002517	ddx56	coding	upstream	252576	2856377 ~ 2875735 (-)
XLOC_002518	NA	coding	upstream	294178	2897979 ~ 2899304 (-)
XLOC_002506	NA	non-coding	downstream	831986	1678283 ~ 1741175 (-)
XLOC_002505	NA	non-coding	downstream	854524	1669144 ~ 1718637 (-)
XLOC_002504	NA	non-coding	downstream	905531	1666342 ~ 1667630 (-)
XLOC_002502	CABZ01066320.1	non-coding	downstream	1020372	1544163 ~ 1552789 (-)
XLOC_002525	NA	non-coding	upstream	718336	3322137 ~ 3332362 (-)
XLOC_002529	CU571170.1	non-coding	upstream	902739	3506540 ~ 3506654 (-)
XLOC_002530	FP236598.1	non-coding	upstream	1164850	3768651 ~ 3768766 (-)
XLOC_002531	NA	non-coding	upstream	1350289	3954090 ~ 3956849 (-)

Expression

Co-expression Network