XLOC_025130 (dre-mir-23a-2)


Basic Information

Item Value
gene id XLOC_025130
gene name dre-mir-23a-2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13406226 ~ 13406323 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049660
CTCTTCTGCCGGCCAGGGGAATTCCTGGCAGAGTGATTTTTAAACCTAATGACTGAATCACATTGCCAGGGATTTCCAATGGCTCGTGTGACTCAGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000081477

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049660 True 98 miRNA 0.49 1 13406226 13406323

Neighbor

gene id symbol gene type direction distance location
XLOC_025129 NA coding upstream 144 13389862 ~ 13406082 (+)
XLOC_025128 NA coding upstream 38718 13360703 ~ 13367508 (+)
XLOC_025127 CU138547.1 coding upstream 59130 13332870 ~ 13347096 (+)
XLOC_025126 sun1 coding upstream 147328 13190012 ~ 13258898 (+)
XLOC_025125 LO018183.1 coding upstream 238898 13149550 ~ 13167328 (+)
XLOC_025131 dre-mir-27c coding downstream 128 13406451 ~ 13413213 (+)
XLOC_025132 si:dkey-117i10.1 coding downstream 34577 13440900 ~ 13446085 (+)
XLOC_025133 zgc:77748 coding downstream 63381 13469704 ~ 13473197 (+)
XLOC_025134 NA coding downstream 70549 13476872 ~ 13477873 (+)
XLOC_025135 CABZ01079251.1 coding downstream 76219 13482542 ~ 13489945 (+)
XLOC_025429 BX649540.1 misc downstream 16842416 30248739 ~ 30249036 (+)
XLOC_025122 NA non-coding upstream 551747 12838694 ~ 12854479 (+)
XLOC_025107 NA non-coding upstream 1141768 12239692 ~ 12264458 (+)
XLOC_025145 NA non-coding downstream 621920 14028243 ~ 14073770 (+)
XLOC_025147 NA non-coding downstream 794720 14201043 ~ 14202519 (+)
XLOC_025148 AL954138.2 non-coding downstream 835796 14242119 ~ 14248538 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G332661 NA non-coding CI01000113 null 2116966 ~ 2117788 (-)
mexican tetra (Astyanax mexicanus) G297493 NA non-coding NW_019172828.1 APWO02000046.1 4583856 ~ 4665614 (+)